hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12143769/chunk_1/iprscan-20080502-12143769.nocrc
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Query sequence: KIAA1769
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00773.9.fs RNB domain                                     215.0    5.1e-63   2
PF00773.9.ls RNB domain                                     206.9    4.2e-59   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00773.9.fs   1/2     799  1006 ..     1   215 [.   161.2  2.9e-47
PF00773.9.ls   1/1     799  1158 ..     1   350 []   206.9  4.2e-59
PF00773.9.fs   2/2    1121  1158 ..   313   350 .]    53.8    9e-16

Alignments of top-scoring domains:
PF00773.9.fs: domain 1 of 2, from 799 to 1006: score 161.2, E = 2.9e-47
                   *->RrDLprdlpffTIDpedakDiDDAlsierlddGgyrLgVHIADVshy
                      R+D  r  ++fT+Dp +a  +DDAls++ l+   +++ VHI DV+++
    KIAA1769   799    REDC-RAFLTFTVDPQGACNLDDALSVRDLGPR-CEVAVHITDVASF 843  

                   VkpgSpLDreArkRgtSvYLPer.viPMLPeeLsndlCSLnpgedRlAlS
                   V+ +  LD eAr+ g   Y P+r+ +PMLP +L++d  SL+pg+dRlA+S
    KIAA1769   844 VPRDGVLDVEARRQGAAFYAPGRePVPMLPASLCQDVLSLLPGRDRLAIS 893  

                   veitidkd.GevldyeiypsvIrskarLtYeevqelle............
                   +++t+ k +G++++ ++ psv++s+++L+Yee++e + ++++ +++ + +
    KIAA1769   894 LFLTMEKAsGQLKSLRFAPSVVQSDRQLSYEEAEEVIRqhpgagrelpar 943  

                   ....adsLrlLllmelakaLrkkRlkrGaleledplppnlevkfildeeg
                    ++ +    ++   +++++Lr +Rl+    + +  +p         de+g
    KIAA1769   944 ldsvDACVVAAC--YFSRLLRRHRLRS---DCFYEQP---------DEDG 979  

                   epvdivreesekrtpahsLiEEfMllANeavArfls<-*
                    +             ah ++ E M+  N++vA+fl+   
    KIAA1769   980 TLG---------FRAAHIMVKEYMIQFNRLVAEFLV    1006 

PF00773.9.ls: domain 1 of 1, from 799 to 1158: score 206.9, E = 4.2e-59
                   *->RrDLprdlpffTIDpedakDiDDAlsierlddGgyrLgVHIADVshy
                      R+D  r  ++fT+Dp +a  +DDAls++ l+   +++ VHI DV+++
    KIAA1769   799    REDC-RAFLTFTVDPQGACNLDDALSVRDLGPR-CEVAVHITDVASF 843  

                   VkpgSpLDreArkRgtSvYLPer.viPMLPeeLsndlCSLnpgedRlAlS
                   V+ +  LD eAr+ g   Y P+r+ +PMLP +L++d  SL+pg+dRlA+S
    KIAA1769   844 VPRDGVLDVEARRQGAAFYAPGRePVPMLPASLCQDVLSLLPGRDRLAIS 893  

                   veitidkd.GevldyeiypsvIrskarLtYeevqelle............
                   +++t+ k +G++++ ++ psv++s+++L+Yee++e + ++++ +++ + +
    KIAA1769   894 LFLTMEKAsGQLKSLRFAPSVVQSDRQLSYEEAEEVIRqhpgagrelpar 943  

                   ....adsLrlLllmelakaLrkkRlkrGaleledplppnlevkfildeeg
                    ++ +    ++   +++++Lr +Rl+    + +  +p         de+g
    KIAA1769   944 ldsvDACVVAAC--YFSRLLRRHRLRS---DCFYEQP---------DEDG 979  

                   epvdivreesekrtpahsLiEEfMllANeavArfls.en..gipgiyRvh
                    +             ah ++ E M+  N++vA+fl++   +    ++R +
    KIAA1769   980 TLG---------FRAAHIMVKEYMIQFNRLVAEFLVgSEctRTVTPLRWQ 1020 

                   pePdeevaknklqdllkllamsaalGl.......................
                   p+P+         +l+ l+    + G + + + + +++ +++++++++++
    KIAA1769  1021 PAPRSQ-------QLKALC---EKHGDrvplslhlghhlhggggsppdtr 1060 

                   ........eldldseg.leldiktlkslqklleelkksd.......egsp
                    +   +  +  + ++ +         +++++ + +++ d ++   ++g++
    KIAA1769  1061 lhllaslwKQVQFAARtQ--------DYEQMVDLVTTDDmhpflapAGRD 1102 

                   eelllnylllrsmkrAeYfvsesstepagHfGLglehYtHFTSPIRRYpD
                   ++++l++      +r++        +++gH++L ++ Yt++TSPIRRY D
    KIAA1769  1103 LRKALERSAFGRCARGHQ-------QQGGHYSLQVDWYTWATSPIRRYLD 1145 

                   LivHRqLkaaLag<-*
                   ++ +Rq+  aL +   
    KIAA1769  1146 VVLQRQILLALGH    1158 

PF00773.9.fs: domain 2 of 2, from 1121 to 1158: score 53.8, E = 9e-16
                   *->epagHfGLglehYtHFTSPIRRYpDLivHRqLkaaLag<-*
                      +++gH++L ++ Yt++TSPIRRY D++ +Rq+  aL +   
    KIAA1769  1121    QQGGHYSLQVDWYTWATSPIRRYLDVVLQRQILLALGH    1158 

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