hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12092417/chunk_1/iprscan-20080502-12092417.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1766 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02141.11.ls DENN (AEX-3) domain 295.6 8.4e-86 1 PF02141.11.fs DENN (AEX-3) domain 293.9 2.8e-85 1 PF03456.8.fs uDENN domain 97.6 5.9e-27 1 PF03455.9.fs dDENN domain 96.4 1.8e-26 1 PF03455.9.ls dDENN domain 98.3 2.1e-26 1 PF03456.8.ls uDENN domain 62.1 1.7e-15 1 PF02893.10.fs GRAM domain 43.9 1.5e-11 1 PF02893.10.ls GRAM domain 45.8 1.3e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03456.8.ls 1/1 1 57 [. 1 108 [] 62.1 1.7e-15 PF03456.8.fs 1/1 1 57 [. 38 108 .] 97.6 5.9e-27 PF02141.11.ls 1/1 87 269 .. 1 231 [] 295.6 8.4e-86 PF02141.11.fs 1/1 87 269 .. 1 231 [] 293.9 2.8e-85 PF03455.9.fs 1/1 322 391 .. 1 81 [] 96.4 1.8e-26 PF03455.9.ls 1/1 322 391 .. 1 81 [] 98.3 2.1e-26 PF02893.10.ls 1/1 842 928 .. 1 82 [] 45.8 1.3e-10 PF02893.10.fs 1/1 842 928 .. 1 82 [] 43.9 1.5e-11 Alignments of top-scoring domains: PF03456.8.ls: domain 1 of 1, from 1 to 57: score 62.1, E = 1.7e-15 *->carLfDyfVvVgldkkpsglgPDelagdneylPellrqFPSKllahy +FP KIAA1766 1 -------------------------------------RFP------- 3 kedhedepfdlksipkFCfPegldsvsvrevnalrdpqfFsFvLTdeDsk ++d++d+pf +++i++FC+P g+++ ++r++ p+fF++vLTd+Ds+ KIAA1766 4 QKDWDDTPF-PQGIELFCQPGGWQLSRERKQ-----PTFFVVVLTDIDSD 47 RtryGfCltfy<-* R +y+ Cltfy KIAA1766 48 R-HYCSCLTFY 57 PF03456.8.fs: domain 1 of 1, from 1 to 57: score 97.6, E = 5.9e-27 *->qFPSKllahykedhedepfdlksipkFCfPegldsvsvrevnalrdp +FP ++d++d+pf +++i++FC+P g+++ ++r++ p KIAA1766 1 RFP-------QKDWDDTPF-PQGIELFCQPGGWQLSRERKQ-----P 34 qfFsFvLTdeDskRtryGfCltfy<-* +fF++vLTd+Ds+R +y+ Cltfy KIAA1766 35 TFFVVVLTDIDSDR-HYCSCLTFY 57 PF02141.11.ls: domain 1 of 1, from 87 to 269: score 295.6, E = 8.4e-86 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk ++pks++l+Srl+++e+Fr++L ++++v+++s ++s KIAA1766 87 FAPKSLVLVSRLYYPEIFRACLGLIYTVYVDSLNVS----------- 122 srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg lEsli nL+ + +Pa G + +k+f+lg KIAA1766 123 ---------------------LESLIANLCA-CLVPAAGGS--QKLFSLG 148 agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl ag +++l+++p++++lp++++++a+lF++LG++nvl+Lf+a+L+ KIAA1766 149 AG-------DRQLIQTPLHDSLPITGTSVALLFQQLGIQNVLSLFCAVLT 191 ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc E+k+Lf+S +++rLs++c+Al +L++Pl++++pyIP+LPa+Ll +vL+ KIAA1766 192 ENKVLFHSASFQRLSDACRALESLMFPLKYSYPYIPILPAQLL---EVLS 238 APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-* +PtPF+IGVhs f+++v++l+ dv++ DLD + KIAA1766 239 SPTPFIIGVHSVFKTDVHELL---DVIIADLDGG 269 PF02141.11.fs: domain 1 of 1, from 87 to 269: score 293.9, E = 2.8e-85 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk ++pks++l+Srl+++e+Fr++L ++++v+++s ++s KIAA1766 87 FAPKSLVLVSRLYYPEIFRACLGLIYTVYVDSLNVS----------- 122 srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg lEsli nL+ + +Pa G + +k+f+lg KIAA1766 123 ---------------------LESLIANLCA-CLVPAAGGS--QKLFSLG 148 agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl ag +++l+++p++++lp++++++a+lF++LG++nvl+Lf+a+L+ KIAA1766 149 AG-------DRQLIQTPLHDSLPITGTSVALLFQQLGIQNVLSLFCAVLT 191 ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc E+k+Lf+S +++rLs++c+Al +L++Pl++++pyIP+LPa+Ll +vL+ KIAA1766 192 ENKVLFHSASFQRLSDACRALESLMFPLKYSYPYIPILPAQLL---EVLS 238 APtPFlIGVhssffelvkdlpleidvvvVDLDtn<-* +PtPF+IGVhs f+++v++l+ dv++ DLD + KIAA1766 239 SPTPFIIGVHSVFKTDVHELL---DVIIADLDGG 269 PF03455.9.fs: domain 1 of 1, from 322 to 391: score 96.4, E = 1.8e-26 *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke ld++vr++FLr+F a+l++gYr++L +r++ e +v++F+k KIAA1766 322 LDKEVRAVFLRLF-AQLFQGYRSCLQLIRIHAE------PVIHFHKT 361 aFLksrprssqraFlsrlletQAVemFaeFIeeR<-* aFL++r ++++ +Fl+++l + +Fa+F+ eR KIAA1766 362 AFLGQRGLVEN-DFLTKVLSGM---AFAGFVSER 391 PF03455.9.ls: domain 1 of 1, from 322 to 391: score 98.3, E = 2.1e-26 *->lddqvreaFLrfFNasllggYrnfLryprkapewegardevvtFqke ld++vr++FLr+F a+l++gYr++L +r++ e +v++F+k KIAA1766 322 LDKEVRAVFLRLF-AQLFQGYRSCLQLIRIHAE------PVIHFHKT 361 aFLksrprssqraFlsrlletQAVemFaeFIeeR<-* aFL++r ++++ +Fl+++l + +Fa+F+ eR KIAA1766 362 AFLGQRGLVEN-DFLTKVLSGM---AFAGFVSER 391 PF02893.10.ls: domain 1 of 1, from 842 to 928: score 45.8, E = 1.3e-10 *->ekfrkiFkeilppeEkLiadckaeVysCplqrpf............s +k+ + lp+eE + + ++ l +++++ +++ +++ KIAA1766 842 PKILRPAL--LPGEEIVCEG-----LRVLLDPDGreeatggllggpQ 881 kipvqGrlYltnnrlcFrSdklgdltkegvyklviPladiervekes<-* +p+ G+l+lt++r+ Fr+ + + l+ e+++++ +P+a+i++ +k++ KIAA1766 882 LLPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKIT 928 PF02893.10.fs: domain 1 of 1, from 842 to 928: score 43.9, E = 1.5e-11 *->ekfrkiFkeilppeEkLiadckaeVysCplqrpf............s +k+ + lp+eE + + ++ l +++++ +++ +++ KIAA1766 842 PKILRPAL--LPGEEIVCEG-----LRVLLDPDGreeatggllggpQ 881 kipvqGrlYltnnrlcFrSdklgdltkegvyklviPladiervekes<-* +p+ G+l+lt++r+ Fr+ + + l+ e+++++ +P+a+i++ +k++ KIAA1766 882 LLPAEGALFLTTYRILFRGTPHDQLVGEQTVVRSFPIASITKEKKIT 928 //