hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-12060690/chunk_1/iprscan-20080502-12060690.nocrc
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Query sequence: KIAA1764
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             58.4    2.2e-14   5
PF00560.23.fs Leucine Rich Repeat                             49.3      2e-12   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.fs   2/5      63    83 ..     1    24 []    15.0   0.0048
PF00560.23.ls   2/5      63    83 ..     1    24 []    16.8    0.074
PF00560.23.ls   3/5      85   105 ..     1    24 []    10.4        3
PF00560.23.ls   4/5     107   127 ..     1    24 []    11.4      1.9
PF00560.23.fs   5/5     133   154 ..     1    24 []    12.0    0.031
PF00560.23.ls   5/5     133   154 ..     1    24 []    13.9     0.54

Alignments of top-scoring domains:
PF00560.23.fs: domain 2 of 5, from 63 to 83: score 15.0, E = 0.0048
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++LdLs+ N +++  ++  l+ l   
    KIAA1764    63    NLQHLDLSS-N-QIS-RIEG-LnTL    83   

PF00560.23.ls: domain 2 of 5, from 63 to 83: score 16.8, E = 0.074
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++LdLs+ N +++  ++  l+ l   
    KIAA1764    63    NLQHLDLSS-N-QIS-RIEG-LnTL    83   

PF00560.23.ls: domain 3 of 5, from 85 to 105: score 10.4, E = 3
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L +L+Ls+ N  +t +++  l+ l   
    KIAA1764    85    KLYTLNLSC-N-LIT-KVEG-LeEL    105  

PF00560.23.ls: domain 4 of 5, from 107 to 127: score 11.4, E = 1.9
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL+ L++s+ N ++ ++l+  l  l   
    KIAA1764   107    NLTRLNVSY-N-HI-DDLSG-LiPL    127  

PF00560.23.fs: domain 5 of 5, from 133 to 154: score 12.0, E = 0.031
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L+++dL++ N ++ +s+++ l+++   
    KIAA1764   133    KLRYIDLHS-N-RI-DSIHHLLqCM    154  

PF00560.23.ls: domain 5 of 5, from 133 to 154: score 13.9, E = 0.54
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L+++dL++ N ++ +s+++ l+++   
    KIAA1764   133    KLRYIDLHS-N-RI-DSIHHLLqCM    154  

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