hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080909/iprscan-20080909-09473277/chunk_1/iprscan-20080909-09473277.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1763 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 366.8 1.3e-105 4 SM00231 77.5 1.7e-18 1 SM00181 28.7 0.00081 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00231 1/1 44 191 .. 1 199 [] 77.5 1.7e-18 SM00282 1/4 218 355 .. 1 137 [] 91.6 9.5e-23 SM00282 2/4 404 538 .. 1 137 [] 88.5 8e-22 SM00181 1/2 566 600 .. 1 32 [] 17.3 2.2 SM00282 3/4 827 954 .. 1 137 [] 123.3 2.7e-32 SM00181 2/2 975 1011 .. 1 32 [] 11.4 25 SM00282 4/4 1052 1190 .. 1 137 [] 63.5 2.7e-14 Alignments of top-scoring domains: SM00231: domain 1 of 1, from 44 to 191: score 77.5, E = 1.7e-18 *->eCn.eplGleggeiadsqitassstgaarelgllgwaakiaRlngng +C++ ++ ++ + +sss+ + + +g + aRln+ KIAA1763 44 DCDdPLVSA----LPQ-ASFSSSSELSSS----HGPGF--ARLNR-- 77 lnedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGr ++g+g+W+p s+ +++w+++DLg+ + vt+v T++G KIAA1763 78 ---RDGAGGWSPL-VSN--------KYQWLQIDLGER-MEVTAVaTQGG- 113 rrrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtge +g+ +wvt y+++++d++ +W y+ e KIAA1763 114 ------YGSSNWVTSYLLMFSDSG---------WNWKQYRQ--------E 140 skvFg..gNadagtvvlndfppPivARYvRilPtaentratgwhngiilR + ++g +gNa+a+ vv+ + p i+AR+ R++P+++n + ++i++R KIAA1763 141 DSIWGfsGNANADSVVYYRLQPSIKARFLRFIPLEWN-----PKGRIGMR 185 lELlGC<-* +E++GC KIAA1763 186 IEVFGC 191 SM00282: domain 1 of 4, from 218 to 355: score 91.6, E = 9.5e-23 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr + is+ F+T +++G+Ll+ ++ gd+++l+L+ + rl l KIAA1763 218 IkDIISLKFKTMQSDGILLHREgpNGDHITLQLR------RARLFLL 258 ydlGsst...tggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg ++ G+ ++t + + lt + l+D +WH+V ++r g++v+ +VD KIAA1763 259 INSGEAKlpsTSTLVNLTLG----SLLDDQHWHSVLIQRLGKQVNFTVD- 303 gnpvsges....t.LdldkeesgplylGGlPe.....lpvspgFrGCirn +++ + +++++ ++ld + +GG+P+++++ + +F+GC++n KIAA1763 304 EHRHHFHArgefNlMNLD----YEISFGGIPApgksvSFPHRNFHGCLEN 349 lrvngk<-* l++ng+ KIAA1763 350 LYYNGV 355 SM00282: domain 2 of 4, from 404 to 538: score 88.5, E = 8e-22 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl + s +f+FrT+ + GlLl++ + + + l+L+ dG+l+ KIAA1763 404 EeVSATFQFRTWNKAGLLLFSElqlISGGILLFLS------DGKLKS 444 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn + + + p+ +t++ + lnDGqWH+Vs++ +++++++ VDg+ KIAA1763 445 NLYQPG---KLPSDITAG----VELNDGQWHSVSLSAKKNHLSVAVDGQM 487 pvsges...t.LdldkeesgplylGGlPe.......lpvspgFrGCirnl + +++++ + g +y+GG P+++ +++ + gF+GC+r + KIAA1763 488 ASAAPLlgpEqIYSG----GTYYFGGCPDksfgskcKSPLGGFQGCMRLI 533 rvngk<-* ++ gk KIAA1763 534 SISGK 538 SM00181: domain 1 of 2, from 566 to 600: score 17.3, E = 2.2 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ C++G G+C + ++++C+C Gy+g +C KIAA1763 566 RCLpnYCEHG-----GECSqswsTFHCnCTNTGYRGaTCH 600 SM00282: domain 3 of 4, from 827 to 954: score 123.3, E = 2.7e-32 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry + ++sf F+Tt+++G+ l + + df+ +eL+ + +++++ KIAA1763 827 LsADVSFFFKTTASSGVFLENLgIADFIRIELR-----SPTVVTFSF 868 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv d G+ gp++++++s pt++nD+qWH+V+vern ++++L+VD p KIAA1763 869 DVGN----GPFEISVQS--PTHFNDNQWHHVRVERNMKEASLQVDQLTPK 912 sges.....t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk<- ++ ++ +++ L+l+ ++l++GG+ + + gF GCir+l++ng+ KIAA1763 913 TQPApadghVlLQLN----SQLFVGGTA--TRQRGFLGCIRSLQLNGM 954 * KIAA1763 - - SM00181: domain 2 of 2, from 975 to 1011: score 11.4, E = 25 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C++ ++ C nG G+C++++ ++ C+C ytg+ C KIAA1763 975 HCSsygkLCRNG-----GKCRerpiGFFCdCTFSAYTGpFCS 1011 SM00282: domain 4 of 4, from 1052 to 1190: score 63.5, E = 2.7e-14 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr +++ i fsFrTt + lLl++++ +++l++ + ++G l+ r KIAA1763 1052 SrEMIKFSFRTTRTPSLLLFVSsfYKEYLSVIIA-----KNGSLQIR 1093 ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg..g y l+ ++p ++ d + ++DGq H++ + r+++ v + +D+++ KIAA1763 1094 YKLNK--YQEPDVVNFDF---KNMADGQLHHIMINREEGVVFIEIDDnrR 1138 npvsges.t.LdldkeesgplylGGlPe.........lpvspgFrGCirn ++v+ +s+t++ +l lG + e+++ ++++ l+ +gF+GC++ KIAA1763 1139 RQVHLSSgTeFSAV----KSLVLGRILEhsdvdqetaLAGAQGFTGCLSA 1184 lrvngk<-* +++ ++ KIAA1763 1185 VQLSHV 1190 //