# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha03234.fasta.huge -Q ../query/KIAA1761.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1761, 837 aa
 vs ./tmplib.25089 library

1986668 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.1213+/-0.00876; mu= -10.0269+/- 0.593
 mean_var=300.4444+/-72.270, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.073993

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1170  ( 838 res)   hg04224(revised)            ( 838) 2559 287.2 4.9e-78


>>KIAA1170  ( 838 res)   hg04224(revised)                 (838 aa)
 initn: 3506 init1: 2142 opt: 2559  Z-score: 1492.8  bits: 287.2 E(): 4.9e-78
Smith-Waterman score: 3843;  69.880% identity (87.349% similar) in 830 aa overlap (23-837:8-836)

               10        20        30        40          50        
KIAA17 MEPAVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAGL--LPGGKAREFNRNQRKD
                             :  :... :: ..   ..:     . :.::  :.::..
KIAA11                LTSSMEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRE
                              10        20        30        40     

       60        70        80        90       100       110        
KIAA17 SEGYSESPDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELD
       :::  . : :::::.:.:  ::::::::::::. ::  ::.::::::. .:  :.: ::.
KIAA11 SEGSVDCPTLEFEYGDADGHAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELE
          50        60        70        80        90       100     

      120       130       140       150       160       170        
KIAA17 TNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECSSEAEVQSWMRYNIFLLLE
        . .... : ::: :::..::.:::::::.::.::::::::.::..:  : ::: ::: .
KIAA11 EDAQKAYIMGLLDRLEVVSRERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQ
         110       120       130       140       150       160     

      180       190       200       210       220       230        
KIAA17 VGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRVLLNIMYLIVETVHQECEGDK
       .:::....:::.:::::: :::::.::::.:.::::.:::::..:::.::... : : : 
KIAA11 MGTFSTFLELLHMEIDNSQACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDP
         170       180       190       200       210       220     

      240       250       260       270       280       290        
KIAA17 AEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTL
         ::: :.:::.::.  ..:.::::..::.:::::::: :::::.:::::::::.:. ::
KIAA11 CGWRTARETFRTELSFSMHNEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTL
         230       240       250       260       270       280     

      300       310       320       330       340             350  
KIAA17 GGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRAASPPASASDLIEQQ------QKRGR
       ::::.::..:..::. :::::: ::::.:...:::::::. . :: :.:      . :::
KIAA11 GGFEHLQTLKVQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGR
         290       300       310       320       330       340     

              360       370        380         390       400       
KIAA17 R--EHKALIKQDNLDAFNERDPYKADD-SREEEEEN--DDDNSLEGETFPLERDEVMPPP
       :  ... : :::.:: .:::: .:... . :::::.  : . .:.::   ::.: ..:::
KIAA11 RGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPP
         350       360       370       380       390       400     

        410        420       430       440       450       460     
KIAA17 -LQHPQT-DRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHE
         : : . .:.. :::::::::::.:::: ::: ::.::::.:::.::.:.:::::::::
KIAA11 PSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHE
         410       420       430       440       450       460     

         470       480       490       500       510       520     
KIAA17 SIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALL
       :.:::::::: :::.:: . :::  . :.: ::: : ..: : ::::.: ::::::::::
KIAA11 SVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALL
         470       480       490       500       510       520     

         530       540       550       560       570       580     
KIAA17 KILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLL
       ::::::::::::::::::::::::::::: :::::::::.:::::::.:::.::..::::
KIAA11 KILLAAAPTSKAKTDSINILADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLL
         530       540       550       560       570       580     

         590       600       610       620       630       640     
KIAA17 LKHFKLNHVYQFEYMAQHLVFANCIPLILKFFNQNIMSYITAKNSISVLDYPHCVVHELP
       ::::::::.:::::..::::::::::::::::::::.::::::::::::::: :....::
KIAA11 LKHFKLNHIYQFEYVSQHLVFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLP
         590       600       610       620       630       640     

         650       660       670       680       690       700     
KIAA17 ELTAESLEAGDSNQFCWRNLFSCINLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVK
       :::.:::::::..:::::::::::::::.:::::::::::::::::::::::::::::::
KIAA11 ELTTESLEAGDNSQFCWRNLFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVK
         650       660       670       680       690       700     

         710       720       730       740       750       760     
KIAA17 QAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQ
       :::.:::::::::.:::::::::::::::::::::::::::.:::::::::.::::::::
KIAA11 QAMLQLYVLKLLKLQTKYLGRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQ
         710       720       730       740       750       760     

         770       780       790       800       810       820     
KIAA17 AEECALRANIERFNARRYDRAHSNPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREV
       ::::.:::::: ::.::::: ... .: :::::::::::::.::::::...:.:::::::
KIAA11 AEECTLRANIEAFNSRRYDRPQDS-EFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREV
         770       780        790       800       810       820    

         830         
KIAA17 FSKPISWEELLQ  
       ::.:: ::::::  
KIAA11 FSQPICWEELLQNH
          830        




837 residues in 1 query   sequences
1986668 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:51 2008 done: Thu Dec 18 15:15:52 2008
 Total Scan time:  0.590 Total Display time:  0.040

Function used was FASTA [version 34.26.5 April 26, 2007]