# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha03234.fasta.huge -Q ../query/KIAA1761.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1761, 837 aa vs ./tmplib.25089 library 1986668 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.1213+/-0.00876; mu= -10.0269+/- 0.593 mean_var=300.4444+/-72.270, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.073993 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1170 ( 838 res) hg04224(revised) ( 838) 2559 287.2 4.9e-78 >>KIAA1170 ( 838 res) hg04224(revised) (838 aa) initn: 3506 init1: 2142 opt: 2559 Z-score: 1492.8 bits: 287.2 E(): 4.9e-78 Smith-Waterman score: 3843; 69.880% identity (87.349% similar) in 830 aa overlap (23-837:8-836) 10 20 30 40 50 KIAA17 MEPAVGGPGPLIVNNKQPQPPPPPPPAAAQPPPGAPRAAAGL--LPGGKAREFNRNQRKD : :... :: .. ..: . :.:: :.::.. KIAA11 LTSSMEDPAAPGTGGPPANGNGNGGGKGKQAAPKGREAFRSQRRE 10 20 30 40 60 70 80 90 100 110 KIAA17 SEGYSESPDLEFEYADTDKWAAELSELYSYTEGPEFLMNRKCFEEDFRIHVTDKKWTELD ::: . : :::::.:.: ::::::::::::. :: ::.::::::. .: :.: ::. KIAA11 SEGSVDCPTLEFEYGDADGHAAELSELYSYTENLEFTNNRRCFEEDFKTQVQGKEWLELE 50 60 70 80 90 100 120 130 140 150 160 170 KIAA17 TNQHRTHAMRLLDGLEVTAREKRLKVARAILYVAQGTFGECSSEAEVQSWMRYNIFLLLE . .... : ::: :::..::.:::::::.::.::::::::.::..: : ::: ::: . KIAA11 EDAQKAYIMGLLDRLEVVSRERRLKVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQ 110 120 130 140 150 160 180 190 200 210 220 230 KIAA17 VGTFNALVELLNMEIDNSAACSSAVRKPAISLADSTDLRVLLNIMYLIVETVHQECEGDK .:::....:::.:::::: :::::.::::.:.::::.:::::..:::.::... : : : KIAA11 MGTFSTFLELLHMEIDNSQACSSALRKPAVSIADSTELRVLLSVMYLMVENIRLERETDP 170 180 190 200 210 220 240 250 260 270 280 290 KIAA17 AEWRTMRQTFRAELGSPLYNNEPFAIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTL ::: :.:::.::. ..:.::::..::.:::::::: :::::.:::::::::.:. :: KIAA11 CGWRTARETFRTELSFSMHNEEPFALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTL 230 240 250 260 270 280 300 310 320 330 340 350 KIAA17 GGFEELQSMKAEKRSILGLPPLPEDSIKVIRNMRAASPPASASDLIEQQ------QKRGR ::::.::..:..::. :::::: ::::.:...:::::::. . :: :.: . ::: KIAA11 GGFEHLQTLKVQKRAELGLPPLAEDSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGR 290 300 310 320 330 340 360 370 380 390 400 KIAA17 R--EHKALIKQDNLDAFNERDPYKADD-SREEEEEN--DDDNSLEGETFPLERDEVMPPP : ... : :::.:: .:::: .:... . :::::. : . .:.:: ::.: ..::: KIAA11 RGSRRQLLTKQDSLDIYNERDLFKTEEPATEEEEESAGDGERTLDGELDLLEQDPLVPPP 350 360 370 380 390 400 410 420 430 440 450 460 KIAA17 -LQHPQT-DRLTCPKGLPWAPKVREKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHE : : . .:.. :::::::::::.:::: ::: ::.::::.:::.::.:.::::::::: KIAA11 PSQAPLSAERVAFPKGLPWAPKVRQKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHE 410 420 430 440 450 460 470 480 490 500 510 520 KIAA17 SIKTLKQHKYTSIAEVQAQMEEEYLRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALL :.:::::::: :::.:: . ::: . :.: ::: : ..: : ::::.: :::::::::: KIAA11 SVKTLKQHKYISIADVQIKNEEELEKCPMSLGEEVVPETPCEILYQGMLYSLPQYMIALL 470 480 490 500 510 520 530 540 550 560 570 580 KIAA17 KILLAAAPTSKAKTDSINILADVLPEEMPTTVLQSMKLGVDVNRHKEVIVKAISAVLLLL ::::::::::::::::::::::::::::: :::::::::.:::::::.:::.::..:::: KIAA11 KILLAAAPTSKAKTDSINILADVLPEEMPITVLQSMKLGIDVNRHKEIIVKSISTLLLLL 530 540 550 560 570 580 590 600 610 620 630 640 KIAA17 LKHFKLNHVYQFEYMAQHLVFANCIPLILKFFNQNIMSYITAKNSISVLDYPHCVVHELP ::::::::.:::::..::::::::::::::::::::.::::::::::::::: :....:: KIAA11 LKHFKLNHIYQFEYVSQHLVFANCIPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLP 590 600 610 620 630 640 650 660 670 680 690 700 KIAA17 ELTAESLEAGDSNQFCWRNLFSCINLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVK :::.:::::::..:::::::::::::::.::::::::::::::::::::::::::::::: KIAA11 ELTTESLEAGDNSQFCWRNLFSCINLLRLLNKLTKWKHSRTMMLVVFKSAPILKRALKVK 650 660 670 680 690 700 710 720 730 740 750 760 KIAA17 QAMMQLYVLKLLKVQTKYLGRQWRKSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQ :::.:::::::::.:::::::::::::::::::::::::::.:::::::::.:::::::: KIAA11 QAMLQLYVLKLLKLQTKYLGRQWRKSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQ 710 720 730 740 750 760 770 780 790 800 810 820 KIAA17 AEECALRANIERFNARRYDRAHSNPDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREV ::::.:::::: ::.::::: ... .: :::::::::::::.::::::...:.::::::: KIAA11 AEECTLRANIEAFNSRRYDRPQDS-EFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREV 770 780 790 800 810 820 830 KIAA17 FSKPISWEELLQ ::.:: :::::: KIAA11 FSQPICWEELLQNH 830 837 residues in 1 query sequences 1986668 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:51 2008 done: Thu Dec 18 15:15:52 2008 Total Scan time: 0.590 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]