hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11351661/chunk_1/iprscan-20080502-11351661.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1746 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02985.12.ls HEAT repeat 39.4 1.2e-08 5 PF02985.12.fs HEAT repeat 32.1 5.2e-08 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02985.12.ls 2/5 877 913 .. 1 36 [] 12.0 1.4 PF02985.12.ls 4/5 956 992 .. 1 36 [] 20.8 0.0046 Alignments of top-scoring domains: PF02985.12.ls: domain 2 of 5, from 877 to 913: score 12.0, E = 1.4 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* + +++ll ++l+ l+++d V ++A++ ++ l++v+ KIAA1746 877 LeMQEKLLKIFLENLEHEDTFVYLSAIQGVALLSDVY 913 PF02985.12.ls: domain 4 of 5, from 956 to 992: score 20.8, E = 0.0046 *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-* +++++ l+ ++l++++Dpd R++++ Lg+l++ l KIAA1746 956 SkYREPLIHTFLRGVRDPDGAHRASSLANLGELCQRL 992 //