hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11333438/chunk_1/iprscan-20080502-11333438.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1745 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 547.8 1e-161 1 PF01403.10.fs Sema domain 545.9 3.9e-161 1 PF01437.15.fs Plexin repeat 42.7 2.2e-13 1 PF01437.15.ls Plexin repeat 44.4 3.5e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.fs 1/1 126 563 .. 1 490 [] 545.9 3.9e-161 PF01403.10.ls 1/1 126 563 .. 1 490 [] 547.8 1e-161 PF01437.15.fs 1/1 581 633 .. 1 63 [] 42.7 2.2e-13 PF01437.15.ls 1/1 581 633 .. 1 63 [] 44.4 3.5e-10 Alignments of top-scoring domains: PF01403.10.fs: domain 1 of 1, from 126 to 563: score 545.9, E = 3.9e-161 *->frtllldedrgrLyVGArNhvyvLnledls.....erlqqkigWpss + +lll++d+++LyVGAr+++++L+ +ls +++e +q++ W ++ KIAA1745 126 YTALLLSRDGRTLYVGAREALFALS-SNLSflpggE--YQELLWGAD 169 pgeekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvC +ek++ C kGk+p + +CqN+i++L+p + +hL++CGT aF+P+C KIAA1745 170 --AEKKQQCSFKGKDP---QRDCQNYIKILLPLSGSHLFTCGTAAFSPMC 214 tlinlgdrseAviiaetdcLFsldvek.....eesGkgrCPydPlhnsts t+in+++ F+l +++++ +e+GkgrCP+dP st+ KIAA1745 215 TYINMEN-------------FTLARDEkgnvlLEDGKGRCPFDPNFKSTA 251 vlvqgrtgeLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskw ++v + geLY+Gtv+ F G+dpaI Rs s p +Te + w KIAA1745 252 LVV-D--GELYTGTVSS------FQGNDPAISRSQ-SLRPTKTES-SLNW 290 lnePnFVdsypipyvhsf...dDdkVYFFFrEtaveyspncgkaiysRVa l +P FV+s ip++ ++dDdk+YFFF Et e++ +++ +i+sR+a KIAA1745 291 LQDPAFVASAYIPESLGSlqgDDDKIYFFFSETGQEFE-FFENTIVSRIA 339 RvCknDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfll R+Ck+D+GG+r l+ +WT+FLKA+L CS+p+ +g+p FN+LQ+vf+l KIAA1745 340 RICKGDEGGERVLQ-QRWTSFLKAQLLCSRPD-DGFP---FNVLQDVFTL 384 ptganlAreLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqv ++ + ++rd+++YGVFt+++ + SAVC+F+m+d+++v KIAA1745 385 SPSPQ-------DWRDTLFYGVFTSQWHRGTT--EGSAVCVFTMKDVQRV 425 FenGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdl F G +k+ ++ +++w+++++ +vP+PRPG C+++s +++ + S++ l KIAA1745 426 F-SGLYKEVNR--ETQQWYTVTH-PVPTPRPGACITNSARErKINSSLQL 471 PDdtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdG PD++lnf k+h+Lmd ++ r+l+ ++ r+ +aV rV+++ KIAA1745 472 PDRVLNFLKDHFLMDG---QVRSRMLLLQPQA--RYQRVAVH-RVPGLH- 514 qlYtVlFlGTddGtvlKkvvvlsrssssyeevvleelqvfkdpriePvqn ++Y+VlFlGT dG+++K+v v +r + ++eelq+f+ + Pvqn KIAA1745 515 HTYDVLFLGTGDGRLHKAVSVGPRV--H----IIEELQIFSSG--QPVQN 556 leisskq<-* l++ + KIAA1745 557 LLLDTHR 563 PF01403.10.ls: domain 1 of 1, from 126 to 563: score 547.8, E = 1e-161 *->frtllldedrgrLyVGArNhvyvLnledls.....erlqqkigWpss + +lll++d+++LyVGAr+++++L+ +ls +++e +q++ W ++ KIAA1745 126 YTALLLSRDGRTLYVGAREALFALS-SNLSflpggE--YQELLWGAD 169 pgeekceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvC +ek++ C kGk+p + +CqN+i++L+p + +hL++CGT aF+P+C KIAA1745 170 --AEKKQQCSFKGKDP---QRDCQNYIKILLPLSGSHLFTCGTAAFSPMC 214 tlinlgdrseAviiaetdcLFsldvek.....eesGkgrCPydPlhnsts t+in+++ F+l +++++ +e+GkgrCP+dP st+ KIAA1745 215 TYINMEN-------------FTLARDEkgnvlLEDGKGRCPFDPNFKSTA 251 vlvqgrtgeLYsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskw ++v + geLY+Gtv+ F G+dpaI Rs s p +Te + w KIAA1745 252 LVV-D--GELYTGTVSS------FQGNDPAISRSQ-SLRPTKTES-SLNW 290 lnePnFVdsypipyvhsf...dDdkVYFFFrEtaveyspncgkaiysRVa l +P FV+s ip++ ++dDdk+YFFF Et e++ +++ +i+sR+a KIAA1745 291 LQDPAFVASAYIPESLGSlqgDDDKIYFFFSETGQEFE-FFENTIVSRIA 339 RvCknDvGGrrylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfll R+Ck+D+GG+r l+ +WT+FLKA+L CS+p+ +g+p FN+LQ+vf+l KIAA1745 340 RICKGDEGGERVLQ-QRWTSFLKAQLLCSRPD-DGFP---FNVLQDVFTL 384 ptganlAreLgIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqv ++ + ++rd+++YGVFt+++ + SAVC+F+m+d+++v KIAA1745 385 SPSPQ-------DWRDTLFYGVFTSQWHRGTT--EGSAVCVFTMKDVQRV 425 FenGpfkhqssEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdl F G +k+ ++ +++w+++++ +vP+PRPG C+++s +++ + S++ l KIAA1745 426 F-SGLYKEVNR--ETQQWYTVTH-PVPTPRPGACITNSARErKINSSLQL 471 PDdtlnfikshpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdG PD++lnf k+h+Lmd ++ r+l+ ++ r+ +aV rV+++ KIAA1745 472 PDRVLNFLKDHFLMDG---QVRSRMLLLQPQA--RYQRVAVH-RVPGLH- 514 qlYtVlFlGTddGtvlKkvvvlsrssssyeevvleelqvfkdpriePvqn ++Y+VlFlGT dG+++K+v v +r + ++eelq+f+ + Pvqn KIAA1745 515 HTYDVLFLGTGDGRLHKAVSVGPRV--H----IIEELQIFSSG--QPVQN 556 leisskq<-* l++ + KIAA1745 557 LLLDTHR 563 PF01437.15.fs: domain 1 of 1, from 581 to 633: score 42.7, E = 2.2e-13 *->nCsqytsCssCLaardpfyCgWCssegrC....trgsaytsfygeCp nCs y+sC++CL+ardp yC+W +s +C++ + ++++ + + KIAA1745 581 NCSLYRSCGDCLLARDP-YCAWSGS--SCkhvsLYQPQ------LAT 618 rsependqwldwswssskCp<-* r++ ++d++ +s+k KIAA1745 619 RPW-----IQDIEGASAKDL 633 PF01437.15.ls: domain 1 of 1, from 581 to 633: score 44.4, E = 3.5e-10 *->nCsqytsCssCLaardpfyCgWCssegrC....trgsaytsfygeCp nCs y+sC++CL+ardp yC+W +s +C++ + ++++ + + KIAA1745 581 NCSLYRSCGDCLLARDP-YCAWSGS--SCkhvsLYQPQ------LAT 618 rsependqwldwswssskCp<-* r++ ++d++ +s+k KIAA1745 619 RPW-----IQDIEGASAKDL 633 //