# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pj01516.fasta.huge -Q ../query/KIAA1744.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1744, 855 aa vs ./tmplib.25089 library 1986650 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.5103+/-0.0103; mu= -14.0022+/- 0.695 mean_var=494.0352+/-121.624, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.057703 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0579 ( 910 res) bg00015 ( 910) 545 60.4 1e-09 >>KIAA0579 ( 910 res) bg00015 (910 aa) initn: 691 init1: 262 opt: 545 Z-score: 266.2 bits: 60.4 E(): 1e-09 Smith-Waterman score: 798; 26.316% identity (53.813% similar) in 931 aa overlap (3-855:31-910) 10 20 30 KIAA17 NNESSLIEQAPIPQDGLTVAPHRAQREAVHIE :..: .: ...: : ... : .: KIAA05 GPGGALPTCPACHKITPRTEAPVSSVSNSLENALHTSAHSTEESLPKRPL-GKHSKVSVE 10 20 30 40 50 40 50 60 70 80 90 KIAA17 KIMLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKELSSETFDKTIL :: :::... . :. : .:.: ::: :.:.:::. .:. ::. :: . :...: .. KIAA05 KIDLKGLSHTKNDRNVECSFEVLWSDSSITSVTKSSSEVTEFISKLCQLYPEENLEK-LI 60 70 80 90 100 110 100 110 120 130 140 150 KIAA17 RALNQGSLKREERRHPDLEPILRQLFSSSSQAFLQSQKVHSFFQSISS-DSLHSINNLQS : . :: : ::. :: : : :.. :....:. :... : ..:.: . . KIAA05 PCLAGPDAFYVERNHVDLDSGLRYLASLPSHV-LKNDHVRRFLSTSSPPQQLQSPSPGNP 120 130 140 150 160 170 160 170 180 190 KIAA17 SL-KTSKILEHLKED--------SSEASSQEEDVLQHA------IIHKKHTGK--SPIVN :: :.. .. . ::....:.. :: . : .:.:. : .. KIAA05 SLSKVGTVMGVSGRPVCGVAGIPSSQSGAQHHG--QHPAGSAAPLPHCSHAGSAGSALAY 180 190 200 210 220 230 200 210 220 230 240 KIAA17 NIGTSCSPLDGL-----TMQYSEQNGIVDWRKQSCTTIQHP-------EHCVTSADQHSA . :: . : : .:::::.:: .. .: :. .. ... KIAA05 RTQMDTSPAILMPSSLQTPQTQEQNGILDWLRKLRLHKYYPVFKQLSMEKFLSLTEEDLN 240 250 260 270 280 290 250 260 270 280 290 KIAA17 EKRSLSSINKKKGKPQTEKEKIKKTDNRLNSRINGIRLST-----PQHAHGGTVK----- . .::. ::: : : : :: :. :: . :. : .: : :. KIAA05 KFESLTMGAKKKLKTQLELEKEKSERRCLNPSAPPLVTSSGVARVPPTSHVGPVQSGRGS 300 310 320 330 340 350 300 310 320 330 340 KIAA17 ---DVNLDIGSGHDTCGE--TSSESYSSPSSPR--HDGRESFESEEEKDRDTDSNSEDSG .. ... . : . .::: :: ::: . .:: .: ::.:: .. . :.: KIAA05 HAAELRVEVEQPHHQLPREGSSSEYSSSSSSPMGVQAREESSDSAEENDRRVEIHLESSD 360 370 380 390 400 410 350 360 370 380 390 400 KIAA17 NPSTTRFTGYGSVNQTVTVKPPVQIASLGNENGNLLEDPLNSPKYQHISFMPTLHCVMHN . . . . .. . . ...: .:. . :: .. .:. .: .: . KIAA05 KEKPVMLLNHFT---SSSARPTAQVLPVQNEASS-------NPSGHHP--LPPQMLSAAS 420 430 440 450 460 410 420 430 440 450 460 KIAA17 GAQKSEVVVPAPKPADGKTIGMLVPSPV-AISAIRESANSTPVGILGPTACTGESEKHLE ... . :: :.. :. : : .. ...: ... :: . ... KIAA05 HITPIRMLNSVHKPERGSADMKLLSSSVHSLLSLEERNKGS-----GPRSSMKVDKSFGS 470 480 490 500 510 470 480 490 500 510 520 KIAA17 LLASPLPIPSTFLPHSSTPALHLTVQRLKLPPPQGSSESCTVNIPQQPPGSLSIASPNTA . . :: .:.: : :: :. : ::: ... : : . . .. KIAA05 AMMDVLP--------ASAP--HQPVQVLS-----GLSESSSMS-PTVSFGPRTKVVHAST 520 530 540 550 560 530 540 550 560 570 KIAA17 FIPIHNPGSFPGSPVATTDPITKSASQVVG---------LNQMVPQIEGNTGTVPQPTNV . . . .. :. : :. : . : :. :.. :: . .: . :.:: KIAA05 LDRVLKTAQQPALVVETSTAATGTPSTVLHAARPPIKLLLSSSVPADSAISGQTSCPNNV 570 580 590 600 610 620 580 590 600 610 620 KIAA17 KVVLPAA------GLSAAQPPASYP----LPGSPLAAGVLPSQNSSVLSTAATSPQPASA .. .: : .: .:. ... .: .:: .: ..: ::. : .:... KIAA05 QISVPPAIINPRTALYTANTKVAFSAMSSMPVGPLQGGFCANSN-----TASPSSHPSTS 630 640 650 660 670 630 640 650 660 670 KIAA17 GISQAQATVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYISAVGNTNANG------TVV ..: :: :. .:. . : .. :.. . ::. : : .: : . . KIAA05 FANMATLPSCPA-PSSSPALSSVPESSFYSSSGGGGSTGNIPA-SNPNHHHHHHHQQPPA 680 690 700 710 720 730 680 690 700 710 720 730 KIAA17 PPQQMGSGP----CGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRVPSFFTLPSICNGS ::: : : ::: :::..: . :. .:. :: . :. . .:... KIAA05 PPQPAPPPPGCIVCTSCGCSGSCGSSGLTVSYANYFQHPFSGPSVFTFPFLPFSPMCSSG 740 750 760 770 780 790 740 750 760 770 780 790 KIAA17 YLNQAHQSNGNQLPFFLPQTPYANGLVHDPVMGSQANYGMQQMAGF-GRFYPVYPAPNVV :.. . ..:. .: ..::... . :::...:..... : .: . :: . ..: KIAA05 YVSAQQYGGGSTFPVV--HAPYSSSGTPDPVLSGQSTFAVPPMQNFMAGTAGVYQTQGLV 800 810 820 830 840 850 800 810 820 830 840 850 KIAA17 ANTSGSGPKKNGNVSCYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLPPSNDTLDSA ....::. ::.::.::::::..:: :::::: ::. :. ::.::.:::: ..:::. KIAA05 GSSNGSSHKKSGNLSCYNCGATGHRAQDCKQPSMDFNRPGTFRLKYAPP----AESLDST 860 870 880 890 900 KIAA17 D : KIAA05 D 910 855 residues in 1 query sequences 1986650 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:11 2008 done: Thu Dec 18 15:15:12 2008 Total Scan time: 0.620 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]