hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11315209/chunk_1/iprscan-20080502-11315209.nocrc
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Query sequence: KIAA1744
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00098.13.fs Zinc knuckle                                    27.9    1.3e-06   1
PF00098.13.ls Zinc knuckle                                    29.9    8.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00098.13.fs   1/1     808   825 ..     1    18 []    27.9  1.3e-06
PF00098.13.ls   1/1     808   825 ..     1    18 []    29.9  8.2e-06

Alignments of top-scoring domains:
PF00098.13.fs: domain 1 of 1, from 808 to 825: score 27.9, E = 1.3e-06
                   *->rkCynCGkpGHiardCpk<-*
                      + CynCG  GH+a dC++   
    KIAA1744   808    VSCYNCGVSGHYAQDCKQ    825  

PF00098.13.ls: domain 1 of 1, from 808 to 825: score 29.9, E = 8.2e-06
                   *->rkCynCGkpGHiardCpk<-*
                      + CynCG  GH+a dC++   
    KIAA1744   808    VSCYNCGVSGHYAQDCKQ    825  

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