hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-11300409/chunk_1/iprscan-20080502-11300409.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1743 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00323 436.8 1.1e-126 1 SM00239 38.1 1.2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00239 1/1 90 186 .. 1 92 [] 38.1 1.2e-06 SM00323 1/1 196 533 .. 1 390 [] 436.8 1.1e-126 Alignments of top-scoring domains: SM00239: domain 1 of 1, from 90 to 186: score 38.1, E = 1.2e-06 *->tLtvkiisArnLp...DPYVkvs.......kTkvvkktlsgfNPvWn +L++++i+A++Lp ++ +++ ++ +T + kt N +W+ KIAA1743 90 ILKLWVIEAKDLPakkKYLCELClddvlyaRTTGKLKTD---NVFWG 133 EesetFeFevpp..s.LeieVyDk..........dfiGrvtippnnahqh E +FeF+ p+ +++++ +y +++++++++++ +G v++p KIAA1743 134 E---HFEFHNLPplRtVTVHLYREtdkkkkkernSYLGLVSLP------- 173 sadglihlsell.ggrh.kl<-* ++ +++ +k+ KIAA1743 174 -------AASVAgRQFVeKW 186 SM00323: domain 1 of 1, from 196 to 533: score 436.8, E = 1.1e-126 *->lkqgelgslrlktvyttdfilpseaYeeLleLllesvdvepltasla +g + +r+k++y+t++ilp+e Y+e+ e ++++++ l+ KIAA1743 196 GGKGPGPMIRIKARYQTITILPMEMYKEFAEHITNHYL------GLC 236 saleevcsvldkdelAtkLvrlFlrrgrgkpfLraLidkEvertddpvnt +ale+++s +k+e A++Lv++++++g+ k+fL++L + Ev+r+ d+ ++ KIAA1743 237 AALEPILSAKTKEEMASALVHILQSTGKVKDFLTDLMMSEVDRCGDNEHL 286 lFRgNsLatKsmevymklvGnqYLhttLkpvLkkiveekkescEvDPsKl +FR+N+LatK++e+y+klvG++YL+++L++++k+++e+++ +cEvDPsK+ KIAA1743 287 IFRENTLATKAIEEYLKLVGQKYLQDALGEFIKALYESDE-NCEVDPSKC 335 evndviSfgdpvegedletnlenLlqyverlfdaIinSsdrlPygLRdic + +dl +++ nL +++e +f++IinS++ +P++L++++ KIAA1743 336 S------------AADLPEHQGNLKMCCELAFCKIINSYCVFPRELKEVF 373 kqLrqaaekrFpsatqdvrykaVssFvFLRFfcPAIlSPklFnLvdehpd ++rq ++ r + +d++ +++s ++FLRF+cPAI+SP+lFnL++e+pd KIAA1743 374 ASWRQECSSRGR---PDISERLISASLFLRFLCPAIMSPSLFNLLQEYPD 420 pttrRtLtLiAKvlQnLANlsesksklfgsKEpwmeplfkndflkqhkdr ++t+RtLtLiAKv QnLAN+++ fgsKE++m ++ n fl++++ + KIAA1743 421 DRTARTLTLIAKVTQNLANFAK-----FGSKEEYMSFM--NQFLEHEWTN 463 vkdFLdelssvdepsesLvdkveelptkskPVstisgrelsllHslllen + +FL+e+s++++ s ++ ++e++ +++grels lHsll+e KIAA1743 464 MQRFLLEISNPETLS---NTAGFEGY-------IDLGRELSSLHSLLWEA 503 gdalkrkknnnrDHKAlgedpldkllfklryfrltthkltngk<-* +l + +kl + r +r++ l+ KIAA1743 504 VSQLEQSIV-------------SKLGPLPRILRDVHTALSTPG 533 //