hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11300409/chunk_1/iprscan-20080502-11300409.nocrc
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Query sequence: KIAA1743
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00616.9.ls GTPase-activator protein for Ras-like GTPase   230.5    3.5e-66   1
PF00616.9.fs GTPase-activator protein for Ras-like GTPase   228.6    1.3e-65   1
PF00169.19.fs PH domain                                       23.2    1.3e-06   1
PF00168.20.fs C2 domain                                       22.7    3.3e-06   1
PF00168.20.ls C2 domain                                       24.6    0.00032   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      29    78 ..    45    92 .]    23.2  1.3e-06
PF00168.20.ls   1/1      91   171 ..     1    88 []    24.6  0.00032
PF00168.20.fs   1/1      91   171 ..     1    88 []    22.7  3.3e-06
PF00616.9.ls   1/1     268   439 ..     1   200 []   230.5  3.5e-66
PF00616.9.fs   1/1     268   439 ..     1   200 []   228.6  1.3e-65

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 29 to 78: score 23.2, E = 1.3e-06
                   *->sgiqvtkvpdn..krkncFeirt.dretlllqaeseeerkeWvkaiq
                      +++ +++v ++  ++++cFe++t+++ +  +++ s+ er +W++ ++
    KIAA1743    29    EEVVIKPVHSSilGQDYCFEVTTsSG-SKCFSCRSAAERDKWMENLR 74   

                   sair<-*
                   +a++   
    KIAA1743    75 RAVH    78   

PF00168.20.ls: domain 1 of 1, from 91 to 171: score 24.6, E = 0.00032
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                      L+++vieAk+Lp+k  k       ++++l+++      +T  + kt 
    KIAA1743    91    LKLWVIEAKDLPAKK-KY-----LCELCLDDVLY---ARTTGKLKTD 128  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-*
                   N  W E+F+F+ ++p+l   +++ +y +  ++++++++  lG vs   
    KIAA1743   129 NVFWGEHFEFH-NLPPLRT-VTVHLYRETDKKKkkerNSYLGLVS    171  

PF00168.20.fs: domain 1 of 1, from 91 to 171: score 22.7, E = 3.3e-06
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqkkkTkvikktl
                      L+++vieAk+Lp+k  k       ++++l+++      +T  + kt 
    KIAA1743    91    LKLWVIEAKDLPAKK-KY-----LCELCLDDVLY---ARTTGKLKTD 128  

                   NPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-*
                   N  W E+F+F+ ++p+l   +++ +y +  ++++++++  lG vs   
    KIAA1743   129 NVFWGEHFEFH-NLPPLRT-VTVHLYRETDKKKkkerNSYLGLVS    171  

PF00616.9.ls: domain 1 of 1, from 268 to 439: score 230.5, E = 3.5e-66
                   *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL
                      +l++l+  E++++ ++++++FR+N+latk++++Yl++vgq+YL+d+L
    KIAA1743   268    FLTDLMMSEVDRCGDNEHLIFRENTLATKAIEEYLKLVGQKYLQDAL 314  

                   gplireiveskedlslElDPssklydgeineeeqtgpslpleknlenLre
                   g++i+ + es+e  ++E+DP sk++  +            l +++ nL+ 
    KIAA1743   315 GEFIKALYESDE--NCEVDP-SKCSAAD------------LPEHQGNLKM 349  

                   ycekfldaIisSvdklPpelryickqiresvekkf.pdakqdeaerlsav
                    ce  +++Ii+S + +P el++++ ++r+++  + +pd     +   +++
    KIAA1743   350 CCELAFCKIINSYCVFPRELKEVFASWRQECSSRGrPDI----S--ERLI 393  

                   ggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvLQ
                   ++ lFLRF +cPAi+sP+lf+l+       +++p++r+ R+LtliaKv Q
    KIAA1743   394 SASLFLRF-LCPAIMSPSLFNLL-------QEYPDDRTARTLTLIAKVTQ 435  

                   nlan<-*
                   nlan   
    KIAA1743   436 NLAN    439  

PF00616.9.fs: domain 1 of 1, from 268 to 439: score 228.6, E = 1.3e-65
                   *->llsqlieeEieektsdpntlFRgNslatkllsaYlrrvgqeYLkdtL
                      +l++l+  E++++ ++++++FR+N+latk++++Yl++vgq+YL+d+L
    KIAA1743   268    FLTDLMMSEVDRCGDNEHLIFRENTLATKAIEEYLKLVGQKYLQDAL 314  

                   gplireiveskedlslElDPssklydgeineeeqtgpslpleknlenLre
                   g++i+ + es+e  ++E+DP sk++  +            l +++ nL+ 
    KIAA1743   315 GEFIKALYESDE--NCEVDP-SKCSAAD------------LPEHQGNLKM 349  

                   ycekfldaIisSvdklPpelryickqiresvekkf.pdakqdeaerlsav
                    ce  +++Ii+S + +P el++++ ++r+++  + +pd     +   +++
    KIAA1743   350 CCELAFCKIINSYCVFPRELKEVFASWRQECSSRGrPDI----S--ERLI 393  

                   ggflFLRFlfcPAivsPelfglveamvtssedhpsprarRnLtliaKvLQ
                   ++ lFLRF +cPAi+sP+lf+l+       +++p++r+ R+LtliaKv Q
    KIAA1743   394 SASLFLRF-LCPAIMSPSLFNLL-------QEYPDDRTARTLTLIAKVTQ 435  

                   nlan<-*
                   nlan   
    KIAA1743   436 NLAN    439  

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