# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh23254.fasta.huge -Q ../query/KIAA1741.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1741, 1777 aa
 vs ./tmplib.25089 library

1985728 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 12.4247+/-0.0126; mu= -14.2375+/- 0.851
 mean_var=626.8345+/-148.752, 0's: 0 Z-trim: 9  B-trim: 8 in 1/39
 Lambda= 0.051227

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1671  ( 364 res)   hh02164                     ( 364)  300 37.9   0.005


>>KIAA1671  ( 364 res)   hh02164                          (364 aa)
 initn: 280 init1: 106 opt: 300  Z-score: 146.2  bits: 37.9 E(): 0.005
Smith-Waterman score: 300;  28.571% identity (55.814% similar) in 301 aa overlap (1490-1776:73-357)

    1460      1470      1480      1490        1500      1510       
KIAA17 EDYSSSSLEPHPADPGMETGEALSFGASPGRCPARPP--PSGSQGLLEEMLAASSSKAVA
                                     .: .: :  :. .. :..:    ..:.  .
KIAA16 SPHNLWVLEMEYYYCPSLLKLLRYLWDQLKQCFSRQPTEPKDTDTLVHE----AGSQYGT
             50        60        70        80        90            

      1520      1530      1540       1550      1560      1570      
KIAA17 RRESAASGLGGLLEEEGAGAGAAQEEVLEPG-RDSPPSWRPQPDGEASQTEDVDGTWGSS
         :.  :: .  :  :.  ..:.. .   :. : :  : . .: . ..:  : .    :.
KIAA16 WTEQCQSGES--LATESPDSSATSTRKQPPSSRLSSLSSQTEPTSAGDQY-DCSRDQRST
      100         110       120       130       140        150     

       1580      1590      1600         1610      1620      1630   
KIAA17 AARWSDQGPAQTSRRPSQGPPARSPSQ---DFSFIEDTEILDSAMYRSRANLGRKRGHRA
       ..  :.    .:.   .  ::   : .   :::::..: .:::.  ..:..:...  .::
KIAA16 SVDHSSTDLESTDGMEGPPPPDACPEKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRA
         160       170       180       190       200       210     

          1640             1650       1660      1670      1680     
KIAA17 PVIRPGGTLGLSEAA-------DSDAH-LFQDSTEPRASRVPSSDEEVVEEPQSRRTRMS
       :. .      .::.        ..:   .:.:::: .. :   ::::   :  :.  :  
KIAA16 PISHSLRRSRFSESESRSPLEDETDNTWMFKDSTEEKSPRKEESDEE---ETASKAERTP
         220       230       240       250       260          270  

        1690      1700      1710      1720      1730      1740     
KIAA17 LGTKGLKVNLFPGLSPSALKAKLRPRNRSAEEGELAESKSSQKESAVQRSKSCKVPGLGK
       . ..  ..  :::..:..:::.:. : .    :: . : . : .:     ::   ::.  
KIAA16 V-SHPQRMPAFPGMDPAVLKAQLHKRPEVDSPGE-TPSWAPQPKSP----KSPFQPGVLG
             280       290       300        310           320      

        1750      1760      1770             
KIAA17 PLTLPPKPEKSSGSEGSSPNWLQALKLKKKKV      
         .:: . .:.  :.  ::.::. :: ::..       
KIAA16 SRVLPSSMDKDERSDEPSPQWLKELKSKKRQSLYENQV
        330       340       350       360    




1777 residues in 1 query   sequences
1985728 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:04 2008 done: Thu Dec 18 15:15:05 2008
 Total Scan time:  0.950 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]