hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11244787/chunk_1/iprscan-20080502-11244787.nocrc
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Query sequence: KIAA1740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00297                                                 121.9    7.2e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00297    1/1      71   175 ..     1   118 []   121.9  7.2e-32

Alignments of top-scoring domains:
SM00297: domain 1 of 1, from 71 to 175: score 121.9, E = 7.2e-32
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                        ++++ ++++l+++ +++ds             pFlepvd +   +
    KIAA1740    71    LDDdFTAMYKVLDVVKAHKDSW------------PFLEPVDESY--A 103  

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                   P+Yy+iIk PMD++ ++kkl++g Y + eeFv+D++ mf N+++YN+++s
    KIAA1740   104 PNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESS 153  

                   evykdAkkLeklfeeklkelpp<-*
                   e+ k++  Le+ f + + +++p   
    KIAA1740   154 EYTKMSDNLERCFHRAMMKHFP    175  

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