hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11244787/chunk_1/iprscan-20080502-11244787.nocrc
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Query sequence: KIAA1740
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00439.15.fs Bromodomain                                 109.4    2.8e-30   1
PF00439.15.ls Bromodomain                                 109.6    8.3e-30   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00439.15.ls   1/1      75   161 ..     1    92 []   109.6  8.3e-30
PF00439.15.fs   1/1      80   161 ..     7    92 .]   109.4  2.8e-30

Alignments of top-scoring domains:
PF00439.15.ls: domain 1 of 1, from 75 to 161: score 109.6, E = 8.3e-30
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      +  ++ kvl+ ++ h+ +++pfl+pV+ s   +P+YY+iIk PMD++
    KIAA1740    75    FTAMY-KVLDVVKAHK-DSWPFLEPVDES--YAPNYYQIIKAPMDIS 117  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                    ++kkl+ g Y  + eeFv+D++ mf N+++YN++ se+ k++     
    KIAA1740   118 SMEKKLNGGLY-CTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDN    161  

PF00439.15.fs: domain 1 of 1, from 80 to 161: score 109.4, E = 2.8e-30
                   *->kvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLkTIkkkl
                      kvl+ ++ h+ +++pfl+pV+ s   +P+YY+iIk PMD++ ++kkl
    KIAA1740    80    KVLDVVKAHK-DSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKL 123  

                   kngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   + g Y  + eeFv+D++ mf N+++YN++ se+ k++     
    KIAA1740   124 NGGLY-CTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDN    161  

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