hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11175044/chunk_1/iprscan-20080502-11175044.nocrc
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Query sequence: KIAA1736
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  67.5    1.6e-15   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/3      56    87 ..     1    46 []     5.3       72
SM00320    2/3      90   130 ..     1    46 []    47.3  2.1e-09
SM00320    3/3     132   170 ..     1    46 []    15.0      2.1

Alignments of top-scoring domains:
SM00320: domain 1 of 3, from 56 to 87: score 5.3, E = 72
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++ +t+           +afspd       +llas   +++i++ 
    KIAA1736    56    PdSPRSTFL----------LAFSPDR------TLLASTHvNHNIYIT 86   

                   d<-*
                   +   
    KIAA1736    87 E    87   

SM00320: domain 2 of 3, from 90 to 130: score 47.3, E = 2.1e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k++++l gH+     ++v+f+p+      + l+asg+ Dg +r+W
    KIAA1736    90    TgKCVHSLIGHRR--TPWCVTFHPTI-----SGLIASGClDGEVRIW 129  

                   d<-*
                   d   
    KIAA1736   130 D    130  

SM00320: domain 3 of 3, from 132 to 170: score 15.0, E = 2.1
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + ++  ++  ++ s+af+p+       +ll+ +  +  i++W
    KIAA1736   132    HgGSESWFTDSNN--AIASLAFHPTA------QLLLIATaNE-IHFW 169  

                   d<-*
                   d   
    KIAA1736   170 D    170  

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