# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ph00512.fasta.huge -Q ../query/KIAA1735.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1735, 493 aa
 vs ./tmplib.25089 library

1987012 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.7516+/-0.00834; mu= 1.5224+/- 0.564
 mean_var=287.2252+/-71.087, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.075677

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0208  ( 748 res)   ha02713                     ( 748)  229 38.6  0.0019


>>KIAA0208  ( 748 res)   ha02713                          (748 aa)
 initn: 214 init1: 121 opt: 229  Z-score: 154.0  bits: 38.6 E(): 0.0019
Smith-Waterman score: 229;  33.929% identity (69.643% similar) in 112 aa overlap (388-491:5-115)

       360       370       380       390        400             410
KIAA17 MERLHVMETQKKQERKVRVKSPRTQVGSEYRESWPPNSKL-PHSQSS------PTVSSTC
                                     :.. ::...: : ....      : . .  
KIAA02                           AAGPRRAPPPSGRLGPAARAGRARAAGPEARAMG
                                         10        20        30    

               420       430       440       450       460         
KIAA17 -TKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKALDPEFGTVKEEIF
        ::..:  : . ::..:..:   :.::: :::....:  .... ::..: .::.::::: 
KIAA02 ETKIIYHLDGQETPYLVKLPLPAERVTLADFKGVLQRP-SYKFFFKSMDDDFGVVKEEIS
           40        50        60        70         80        90   

     470       480       490                                       
KIAA17 HDDDAIPGWEGKIVAWVEEDHGEN                                    
        :.  .: ..:..:.:.   .:                                      
KIAA02 DDNAKLPCFNGRVVSWLVSAEGSHPDPAPFCADNPSELPPPMERTGGIGDSRPPSFHPHA
           100       110       120       130       140       150   




493 residues in 1 query   sequences
1987012 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:51 2008 done: Thu Dec 18 15:14:52 2008
 Total Scan time:  0.450 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]