# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ph00331.fasta.huge -Q ../query/KIAA1734.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1734, 1313 aa
 vs ./tmplib.25089 library

1986192 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.4156+/-0.00854; mu= -7.9838+/- 0.578
 mean_var=318.5550+/-75.133, 0's: 0 Z-trim: 2  B-trim: 4 in 1/39
 Lambda= 0.071859

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1289  ( 2793 res)   hh15326s2                  (2793)  504 67.1 4.6e-11


>>KIAA1289  ( 2793 res)   hh15326s2                       (2793 aa)
 initn: 465 init1: 165 opt: 504  Z-score: 290.6  bits: 67.1 E(): 4.6e-11
Smith-Waterman score: 506;  31.818% identity (60.909% similar) in 330 aa overlap (851-1167:2392-2710)

              830       840       850        860       870         
KIAA17 EKAGKDGPPKSFRELKEAIKILESLKNMTVEQLLTG-SPTSPTVEPEKPTREKKFLDDIK
                                     :.. :: .: .   :::  :    .. ::.
KIAA12 QSECQTSVGTLLAKMKTCVDTYTNRLRSKRENVKTGVKPDASDQEPEGLTL---LVPDIQ
            2370      2380      2390      2400      2410           

     880       890       900       910        920       930        
KIAA17 KLQENLKKTLDNVAIVEEEKMEAVPDVERKED-KPEGQSPVKAEWPSETPVLCQQCGGKP
       :  : .  .  ..  ...::   . .  .:   ::.  : .:.   . . :. .      
KIAA12 KTAEIVYAATTSLRQANQEK--KLGEYSKKAAMKPKPLSVLKSLEEKYVAVMKKLQFD--
     2420      2430        2440      2450      2460      2470      

      940       950       960       970       980         990      
KIAA17 GVTFTSAKGEVFSVLEFAPSNHSFKKIEFQPPEAKKFFSTVR--KEMALLATSLP----E
         ::  .. .  . : :  . : ..... .  .:..   . :  .: . :.::::     
KIAA12 --TFEMVSEDEDGKLGFKVNYHYMSQVK-NANDANSAARARRLAQEAVTLSTSLPLSSSS
           2480      2490      2500       2510      2520      2530 

           1000      1010      1020      1030      1040            
KIAA17 GIMVKTFEDRMDLFSALIKGPTRTPYEDGLYLFDIQLPNIYPAVPPHFCYLSQCSG---R
       ...:.  :.:.:....:: ::. ::: .: . ::. .:. ::. :: .  :   .:   :
KIAA12 SVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPP-LVNLETTGGHSVR
            2540      2550      2560      2570       2580      2590

    1050      1060      1070       1080      1090      1100        
KIAA17 LNPNLYDNGKVCVSLLGTWIGKGTERWTSK-SSLLQVLISIQGLILVNEPYYNEAGFDSD
       .:::::..::::.:.:.:: :.  :.:. . ::.::::.:.:.:::: :::.:: :.. .
KIAA12 FNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERS
             2600      2610      2620      2630      2640      2650

     1110      1120       1130      1140      1150      1160       
KIAA17 RGLQEGYENSRCYN-EMALIRVVQSMTQLVRRPPEVFEQEIRQHFSTGGWRLVNRIESWL
       ::   : ..:: :. ..    :  .: . .: :   :.. :..::     ... . : :.
KIAA12 RGTPSGTQSSREYDGNIRQATVKWAMLEQIRNPSPCFKEVIHKHFYLKRVEIMAQCEEWI
             2660      2670      2680      2690      2700      2710

      1170      1180      1190      1200      1210      1220       
KIAA17 ETHALLEKAQALPNGVPKASSSPEPPAVAELSDSGQQEPEDGGPAPGEASQGSDSEGGAQ
                                                                   
KIAA12 ADIQQYSSDKRVGRTMSHHAAALKRHTAQLREELLKLPCPEGLDPDTDDAPEVCRATTGA
             2720      2730      2740      2750      2760      2770




1313 residues in 1 query   sequences
1986192 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:49 2008 done: Thu Dec 18 15:14:50 2008
 Total Scan time:  0.760 Total Display time:  0.080

Function used was FASTA [version 34.26.5 April 26, 2007]