hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11143125/chunk_1/iprscan-20080502-11143125.nocrc
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Query sequence: KIAA1734
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00179.16.fs Ubiquitin-conjugating enzyme                    99.5    1.5e-27   1
PF00179.16.ls Ubiquitin-conjugating enzyme                   101.4    2.5e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00179.16.fs   1/1     978  1127 ..     1   165 []    99.5  1.5e-27
PF00179.16.ls   1/1     978  1127 ..     1   165 []   101.4  2.5e-27

Alignments of top-scoring domains:
PF00179.16.fs: domain 1 of 1, from 978 to 1127: score 99.5, E = 1.5e-27
                   *->RLqkElkelektelqkdpppgisagpvddadgpnnlfeWevtIiGPe
                       ++kE +      l ++ p+gi ++  +d     +++ + ++I GP 
    KIAA1734   978    TVRKEMA-----LLATSLPEGIMVKTFED-----RMDLFSALIKGPT 1014 

                   gTpYeGGvFkldieFPedYPfkPPkvkFtT...kiyHPNVdspsGeiCLd
                    TpYe+G++ +di++P  YP  PP+  ++++ + +++PN +  +G +C++
    KIAA1734  1015 RTPYEDGLYLFDIQLPNIYPAVPPHFCYLSqcsGRLNPNLY-DNGKVCVS 1063 

                   ILkPGDDpgYEaderd.d.evWsPaltvrsvLlsiqsLLL.sePyNpesP
                    L          ++ ++++e W+   ++ +vL+siq L+L +ePy++e +
    KIAA1734  1064 LLG---------TWIGkGtERWTSKSSLLQVLISIQGLILvNEPYYNEAG 1104 

                   lnaeaAklyken.reefkkrvrerv<-*
                    + + + +   ++ + +++++   +   
    KIAA1734  1105 FDSDRGLQEGYEnSRCYNEMA--LI    1127 

PF00179.16.ls: domain 1 of 1, from 978 to 1127: score 101.4, E = 2.5e-27
                   *->RLqkElkelektelqkdpppgisagpvddadgpnnlfeWevtIiGPe
                       ++kE +      l ++ p+gi ++  +d     +++ + ++I GP 
    KIAA1734   978    TVRKEMA-----LLATSLPEGIMVKTFED-----RMDLFSALIKGPT 1014 

                   gTpYeGGvFkldieFPedYPfkPPkvkFtT...kiyHPNVdspsGeiCLd
                    TpYe+G++ +di++P  YP  PP+  ++++ + +++PN +  +G +C++
    KIAA1734  1015 RTPYEDGLYLFDIQLPNIYPAVPPHFCYLSqcsGRLNPNLY-DNGKVCVS 1063 

                   ILkPGDDpgYEaderd.d.evWsPaltvrsvLlsiqsLLL.sePyNpesP
                    L          ++ ++++e W+   ++ +vL+siq L+L +ePy++e +
    KIAA1734  1064 LLG---------TWIGkGtERWTSKSSLLQVLISIQGLILvNEPYYNEAG 1104 

                   lnaeaAklyken.reefkkrvrerv<-*
                    + + + +   ++ + +++++   +   
    KIAA1734  1105 FDSDRGLQEGYEnSRCYNEMA--LI    1127 

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