hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11060473/chunk_1/iprscan-20080502-11060473.nocrc
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Query sequence: KIAA1729
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  76.5    3.3e-18   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/4      81   103 ..     1    23 []    20.1     0.32
SM00355      2/4     108   130 ..     1    23 []    24.1     0.02
SM00355      3/4     136   159 ..     1    23 []    20.3     0.27
SM00355      4/4     982  1004 ..     1    23 []    12.0       14

Alignments of top-scoring domains:
SM00355: domain 1 of 4, from 81 to 103: score 20.1, E = 0.32
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C +s++++ ++k+H  +H   
    KIAA1729    81    YYCDK-CRFSTKDPlQYKKHTLQH    103  

SM00355: domain 2 of 4, from 108 to 130: score 24.1, E = 0.02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C++   +k++++rH+ +H   
    KIAA1729   108    FICSH-CSYISYTKgEFQRHLVKH    130  

SM00355: domain 3 of 4, from 136 to 159: score 20.3, E = 0.27
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C++ C++   + +  ++H ++vH   
    KIAA1729   136    YQCEY-CDYGAIRNdYIVKHTKrVH    159  

SM00355: domain 4 of 4, from 982 to 1004: score 12.0, E = 14
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC + Cg+ + ++++   H ++H   
    KIAA1729   982    FKCWF-CGRLYEDQeEWMSHGQRH    1004 

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