hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11060473/chunk_1/iprscan-20080502-11060473.nocrc
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Query sequence: KIAA1729
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          67.2    4.8e-17   4
PF00096.16.fs Zinc finger, C2H2 type                          59.3    1.1e-14   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   3/4     136   159 ..     1    24 []    18.2    0.027

Alignments of top-scoring domains:
PF00096.16.ls: domain 3 of 4, from 136 to 159: score 18.2, E = 0.027
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C+ +C++   r++   +H ++ H   
    KIAA1729   136    YQCE-YCDYGAIRNDYIVKHTKRvH    159  

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