hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-11023564/chunk_1/iprscan-20080502-11023564.nocrc
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Query sequence: KIAA1727
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00498                                                 195.5    5.1e-54   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00498      1/1      74   514 ..     1   499 []   195.5  5.1e-54

Alignments of top-scoring domains:
SM00498: domain 1 of 1, from 74 to 514: score 195.5, E = 5.1e-54
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseise..gtvWettv
                        +    kk++++++W+ +            P e++++++ +W  t 
    KIAA1727    74    GYSHLGKKKRMRSFFWKTI------------PEEQVRgkTNIW--TL 106  

                   ndkldeekfLynnldldeleelFaakektkkakkrsvsekksk.lkkkkv
                    +  +e ++   + d++ +eelF+ +e t k +     ++++++   + +
    KIAA1727   107 -AARQEHHY---QIDTKTIEELFGQQEDTTKSSL--PRRGRTLnSSFREA 150  

                   qqnlkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvd
                   +++++ilD+krs n  ++I+l+ +  k s     i+e i+++ ++  + +
    KIAA1727   151 REEITILDAKRSMN--IGIFLKQF--KKSPRS--IVEDIHQGKSEHYGSE 194  

                   lleqLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLi
                   +l   lkf+P   + ee+kkl+ +++d    +++L+ a+  Fl+ + + +
    KIAA1727   195 TLREFLKFLP---ESEEVKKLKAFSGD----VSKLSLADS-FLYGLIQ-V 235  

                   pyleeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeli
                   p ++ R++a+  k  F +    L  ++ ++ +A +eL++ + +  +L l+
    KIAA1727   236 PNYSLRIEAMVLKKEFLPSCSSLYTDITVLRTAIKELMSCEELHSILHLV 285  

                   LaiGNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiir
                   L++GN+MNag +   G+A GFkLssLlkL+d+K  + +++LLHf++++  
    KIAA1727   286 LQAGNIMNAGGYA--GNAVGFKLSSLLKLADTKANKPGMNLLHFVAQEAQ 333  

                   kkypdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsd
                   kk   ll+F + lhhv k ++++le+ e++++ l  +        + L+ 
    KIAA1727   334 KKDTILLNFSEKLHHVQKTARLSLENTEAELHLLFVR-------TKSLKE 376  

                   peghpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpk
                     + +  ++++ m+ Fl+ A ek+++L+   ++l+ +   l  +++ed k
    KIAA1727   377 NIQRD-GELCQQMEDFLQFAIEKLRELECWKQELQDEAYTLIDFFCEDKK 425  

                   drdvspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalr
                   +  +  +e F+ f++F + F+ka+++n      + +e++e+r   ql++ 
    KIAA1727   426 T--MKLDECFQIFRDFCTKFNKAVKDN------HDREAQELR---QLQR- 463  

                   vketteyeqssskqkene.errvernplmdfeverdflgvldsllkelrt
                     + +e++q s +++e         + + ++ ve+  +   + ll  l+ 
    KIAA1727   464 -LKEQEQKQRSWATGELGaF----GRSSSENDVELLTKKGAEGLLPFLHP 508  

                   dssfer<-*
                    + + +   
    KIAA1727   509 RPISPS    514  

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