# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pf00950.fasta.huge -Q ../query/KIAA1725.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1725, 1042 aa vs ./tmplib.25089 library 1986463 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.2166+/-0.00703; mu= 0.9539+/- 0.477 mean_var=192.6483+/-45.884, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.092404 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1298 ( 738 res) fg04206 ( 738) 468 75.4 3.1e-14 KIAA1700 ( 690 res) fj15353 ( 690) 210 41.0 0.00067 >>KIAA1298 ( 738 res) fg04206 (738 aa) initn: 628 init1: 455 opt: 468 Z-score: 347.4 bits: 75.4 E(): 3.1e-14 Smith-Waterman score: 470; 25.731% identity (50.146% similar) in 684 aa overlap (1-623:72-726) 10 20 30 KIAA17 KKHGSKCLVHCKMGVSRSASTVIAYAMKEY :.. :::::::::::::::::::::::::. KIAA12 FAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSASTVIAYAMKEF 50 60 70 80 90 100 40 50 60 70 80 90 KIAA17 GWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSHSDSDLSDHHEP :: :..::.:::..:..:.:: .::::: ::.::: :::::::::::...::.:.. . KIAA12 GWPLEKAYNYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQTDSSLQQPVDD 110 120 130 140 150 160 100 110 120 130 140 KIAA17 ICKPGLELNKKDITTSADQIAEVKTMESH---PPIPPVF---VEHMVPQDANQKG----L :: : . : .:. . . ::.: : . ..:. .. : : KIAA12 PAGPGDFLPETPDGTPESQLPFLDDAAQPGLGPPLPCCFRRLSDPLLPSPEDETGSLVHL 170 180 190 200 210 220 150 160 170 180 KIAA17 CTKERMICLEFTS---------REFHAGQ------IEDELNLNDINGCSSGCCLNESKFP :: :: .. :. . :. .. .:.... .: :.. : KIAA12 EDPEREALLEEAAPPAEVHRPARQPQQGSGLCEKDVKKKLEFGSPKGRSGSLLQVEETER 230 240 250 260 270 280 190 200 210 220 230 KIAA17 LDNCHASKALIQPGHVPE-------MANKFPDLTVEDLETDALKADMNVHLLPMEELTSP .. :.. : .. . . :. . .: ::. . .: .. : . . KIAA12 EEGLGAGRWGQLPTQLDQNLLNSENLNNNSKRSCPNGMEDDAIFGILN-KVKPSYKSCAD 290 300 310 320 330 340 240 250 260 270 280 KIAA17 LKDPPMSPDPES-------PSPQPSCQTE--ISDFSTDRIDFFSALEKFVE--LSQETRS : : ::. :. : . .... . ... . : : :. KIAA12 CMYPTASGAPEASRERCEDPNAPAICTQPAFLPHITSSPVAHLASRSRVPEKPASGPTEP 350 360 370 380 390 400 290 300 310 320 330 KIAA17 RSF----SHSRMEELGGGRNESCRLSVVEVAPSKVTADDQRSSSLSNTPHA-----SEES : . : . : : . . . . . ::. : .: : .. : : : KIAA12 PPFLPPAGSRRADTSGPGAGAALEPPASLLEPSRETPKVLPKSLLLKNSHCDKNPPSTEV 410 420 430 440 450 460 340 350 360 370 380 390 KIAA17 SMDEEQSKAISELVSPDI--FMQSHSENAISVKEIVTEIESISQGVGQIQLKGDILPNPC . ::.: . . :. .....::. . . .. . ::: : .: : . KIAA12 VIKEESSPKKDMKPAKDLRLLFSNESEKPTTNSYLMQHQESIIQ----LQKAGLVRK--- 470 480 490 500 510 400 410 420 430 440 450 KIAA17 HTPKKNSIHELLLERAQTPENKPGHMEQDEDSCTAQPELAKDSGMCNPEGCLTTHSSIAD :: . . .. . . : : .. : . : : :: ..: . . : :. :. .. KIAA12 HTKELERLKSVPADPA--PPSRDGPASRLEASI---PEESQDPAALHELGPLVMPSQAGS 520 530 540 550 560 460 470 480 490 500 510 KIAA17 LEEGEPAEGEQELQGSGMHPGAKWYPGSVRRATLEFEERLRQEQEHHGAAPTCTSLSTR- :..: : . : :: : .: . : : . . . . .:: .:.:. KIAA12 DEKSEAAPASLE-GGSLKSPPPFFYRLD---HTSSFSKDFLKTICY---TPTSSSMSSNL 570 580 590 600 610 620 520 530 540 550 560 570 KIAA17 -KNSKNDSSVADLAPKGKSDEAPPEHSFVLKEPEM---SKGKGKYSGSEAGSLSHSEQNA ..:..:: . . : . : :. . : : ..: .. :::. : .. KIAA12 TRSSSSDSIHSVRGKPGLVKQRTQEIETRLRLAGLTVSSPLKRSHSLAKLGSLTFSTEDL 630 640 650 660 670 680 580 590 600 610 620 KIAA17 TVPAPRVLEFDHLPDPQEGPGSDTGTQQE--GVLKDLRTVIPYQESETQAVPLPLPKRVE . : . . . : :. :... .: :. .: : :. .. : : KIAA12 SSEA----DPSTVADSQDTTLSESSFLHEPQGTPRD-----PAATSKPSGKPAPENLKSP 690 700 710 720 730 630 640 650 660 670 680 KIAA17 IIEYTHIVTSPNHTGPGSEIATSEKSGEQGLRKVNMEKSVTVLCTLDENLNRTLDPNQVS KIAA12 SWMSKS >>KIAA1700 ( 690 res) fj15353 (690 aa) initn: 248 init1: 189 opt: 210 Z-score: 161.9 bits: 41.0 E(): 0.00067 Smith-Waterman score: 223; 27.208% identity (53.357% similar) in 283 aa overlap (2-269:259-509) 10 20 30 KIAA17 KKHGSKC-LVHCKMGVSRSASTVIAYAMKEY : .. : :::: :.::::. .::: ::.. KIAA17 SHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCVLVHCLAGISRSATIAIAYIMKRM 230 240 250 260 270 280 40 50 60 70 80 KIAA17 GWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSHSDSDLSDHH-- .::.:: .:::.: . .:: .:. :: .:. :. .:. : : :. : KIAA17 DMSLDEAYRFVKEKRPTISPNFNFLGQLLDYE------KKIKNQTGASGPKSKLKLLHLE 290 300 310 320 330 340 90 100 110 120 130 140 KIAA17 ---EPICKPGL-ELNKKDITTSADQIAEVKTMES--HPPIPPVFVEHMVPQDANQKGLCT ::. :.. : ..:. : . :. : :. . :. :. : :: . : .: KIAA17 KPNEPV--PAVSEGGQKSETPLSPPCADSATSEAAGQRPVHPASVPS-VP--SVQPSL-L 350 360 370 380 390 150 160 170 180 190 KIAA17 KERMICLEFTSREFHAGQIEDELNLN-----DINGCSSGCCLNESKFPLDNCHASKALIQ .. . ... .. : ..:: .:. ::.. : . . : ... . . . KIAA17 EDSPLVQALSGLHLSADRLEDSNKLKRSFSLDIKSVSYSASMAASLHGFSSSEDALEYYK 400 410 420 430 440 450 200 210 220 230 240 250 KIAA17 PGHVPEMANKFPDLTVEDLETDALKADMNVHLLPMEELTSPLKDPPMSPDPESPSPQPSC :. . . .::. ... :..::. . : ::: : : . KIAA17 PSTTLDGTNKLCQFS------------------PVQELSE--QTPETSPDKEEASIPKKL 460 470 480 490 260 270 280 290 300 310 KIAA17 QT-EISDFSTDRIDFFSALEKFVELSQETRSRSFSHSRMEELGGGRNESCRLSVVEVAPS :: . :: .. :. KIAA17 QTARPSDSQSKRLHSVRTSSSGTAQRSLLSPLHRSGSVEDNYHTSFLFGLSTSQQHLTKS 500 510 520 530 540 550 1042 residues in 1 query sequences 1986463 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:27 2008 done: Thu Dec 18 15:14:28 2008 Total Scan time: 0.690 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]