# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pf00330s1.fasta.huge -Q ../query/KIAA1719.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1719, 1050 aa
 vs ./tmplib.25089 library

1986455 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 8.4585+/-0.00776; mu= 0.3978+/- 0.525
 mean_var=254.6195+/-60.487, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.080376

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1232  ( 520 res)   fh08445                     ( 520)  201 37.0   0.008


>>KIAA1232  ( 520 res)   fh08445                          (520 aa)
 initn: 262 init1: 154 opt: 201  Z-score: 142.6  bits: 37.0 E(): 0.008
Smith-Waterman score: 202;  23.207% identity (57.806% similar) in 237 aa overlap (138-371:46-263)

       110       120       130       140       150       160       
KIAA17 GIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGF
                                     : : .   .::       . :.: ....::
KIAA12 SGSGLAMGLGSASASAWRRASQRWAWPLRSLRPGGDAREPR------KIILHKGSTGLGF
          20        30        40        50              60         

       170       180       190       200       210       220       
KIAA17 VLRGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLR
        . ::  :::   . . ....  :::::  : :. :::.:::.:. :..:.:  : :.:.
KIAA12 NIVGG--EDG---EGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK
      70             80        90       100       110       120    

       230       240       250       260       270          280    
KIAA17 QCSHEALFQVEYDVATPDTVANASGPLMVEIVKTPGSALGISLTTT---SLRNKSVITID
       . .. . . ..:     .   .    :  .....  :. . :: :.   ::  ....  :
KIAA12 RAGQSVTIVAQYRPEEYSRFESKIHDLREQMMNSSMSSGSGSLRTSEKRSLYVRALFDYD
          130       140       150       160       170       180    

          290       300       310       320       330       340    
KIAA17 RIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRP
       : . . . ... ..  :: .  :.... :       ..:..  .:. .. ..:   :.. 
KIAA12 RTRDSCLPSQGLSFSYGDILHVINASDDE----WWQARLVTPHGESEQIGVIP---SKKR
          190       200       210           220       230          

          350       360       370       380       390       400    
KIAA17 LRPSEAVKVQRSEQLHRWDPCVPSCHSPRPGHCRMPTWATPAGQDQSRSLSSTPFSSPTL
       .. .: ... .. ..:     . : .:                                 
KIAA12 VEKKERARL-KTVKFHARTGMIESNRSIKTKRKKSFRLSRKFPFYKSKENMAQESSIQEQ
       240        250       260       270       280       290      




1050 residues in 1 query   sequences
1986455 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:13 2008 done: Thu Dec 18 15:14:14 2008
 Total Scan time:  0.700 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]