hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10483553/chunk_1/iprscan-20080502-10483553.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1719 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 343.5 3.3e-100 7 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 329.6 4.9e-96 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.fs 1/7 55 135 .. 1 86 [] 52.6 4e-14 PF00595.14.ls 1/7 55 135 .. 1 86 [] 54.6 3.1e-13 PF00595.14.ls 2/7 155 238 .. 1 86 [] 56.8 6.8e-14 PF00595.14.fs 2/7 155 238 .. 1 86 [] 54.8 9.7e-15 PF00595.14.ls 3/7 255 336 .. 1 86 [] 40.3 6.1e-09 PF00595.14.fs 3/7 255 336 .. 1 86 [] 38.3 4.2e-10 PF00595.14.ls 4/7 463 549 .. 1 86 [] 42.0 1.8e-09 PF00595.14.fs 4/7 463 549 .. 1 86 [] 40.0 1.4e-10 PF00595.14.ls 5/7 564 645 .. 1 86 [] 54.1 4.4e-13 PF00595.14.fs 5/7 564 645 .. 1 86 [] 52.1 5.6e-14 PF00595.14.fs 6/7 663 742 .. 1 86 [] 60.8 1.9e-16 PF00595.14.ls 6/7 663 742 .. 1 86 [] 62.8 1e-15 PF00595.14.fs 7/7 948 1027 .. 1 86 [] 31.0 4.7e-08 PF00595.14.ls 7/7 948 1027 .. 1 86 [] 33.0 9.7e-07 Alignments of top-scoring domains: PF00595.14.fs: domain 1 of 7, from 55 to 135: score 52.6, E = 4e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v l k +++ lG++i+gg+dk+ vs++ pG g A+++ L KIAA1719 55 VVELIKK-EGSTLGLTISGGTDKD--GKPRVSNLRPG-GLAARSDLL 97 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD I svNG +l+ l+h+e++ +lk+ g+ v L+v+ KIAA1719 98 NIGDYIRSVNGIHLTRLRHDEIITLLKNVGE-RVVLEVE 135 PF00595.14.ls: domain 1 of 7, from 55 to 135: score 54.6, E = 3.1e-13 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v l k +++ lG++i+gg+dk+ vs++ pG g A+++ L KIAA1719 55 VVELIKK-EGSTLGLTISGGTDKD--GKPRVSNLRPG-GLAARSDLL 97 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD I svNG +l+ l+h+e++ +lk+ g+ v L+v+ KIAA1719 98 NIGDYIRSVNGIHLTRLRHDEIITLLKNVGE-RVVLEVE 135 PF00595.14.ls: domain 2 of 7, from 155 to 238: score 56.8, E = 6.8e-14 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG +v+l k +++++Gf ++gg +++++ ++++ + v pG g+A++ G KIAA1719 155 DVSLYK--EGNSFGFVLRGGAHEDGhkSRPLVLTYVRPG-GPADREG 198 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +L++GD++lsv+G +l + sh++a + l++++ e v+ KIAA1719 199 SLKVGDRLLSVDGIPLHGASHATALATLRQCSH-EALFQVE 238 PF00595.14.fs: domain 2 of 7, from 155 to 238: score 54.8, E = 9.7e-15 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG +v+l k +++++Gf ++gg +++++ ++++ + v pG g+A++ G KIAA1719 155 DVSLYK--EGNSFGFVLRGGAHEDGhkSRPLVLTYVRPG-GPADREG 198 rLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +L++GD++lsv+G +l + sh++a + l++++ e v+ KIAA1719 199 SLKVGDRLLSVDGIPLHGASHATALATLRQCSH-EALFQVE 238 PF00595.14.ls: domain 3 of 7, from 255 to 336: score 40.3, E = 6.1e-09 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v + k ++ lG+s+ ++ + + i + ++ p + +++G+L KIAA1719 255 MVEIVKT-PGSALGISLT-TTSLRNKSVITIDRIKPA-SVVDRSGAL 298 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD Ils++G+++e s++ea ++l ++++ +v+L++l KIAA1719 299 HPGDHILSIDGTSMEHCSLLEATKLLASISE-KVRLEIL 336 PF00595.14.fs: domain 3 of 7, from 255 to 336: score 38.3, E = 4.2e-10 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v + k ++ lG+s+ ++ + + i + ++ p + +++G+L KIAA1719 255 MVEIVKT-PGSALGISLT-TTSLRNKSVITIDRIKPA-SVVDRSGAL 298 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD Ils++G+++e s++ea ++l ++++ +v+L++l KIAA1719 299 HPGDHILSIDGTSMEHCSLLEATKLLASISE-KVRLEIL 336 PF00595.14.ls: domain 4 of 7, from 463 to 549: score 42.0, E = 1.8e-09 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG ev+l + +g+G++++gg + + + v+ + p+ ++Ae+ G KIAA1719 463 EVVLCGD-PLSGFGLQLQGGIFATEtlSSPPLVCFIEPD-SPAERCG 507 rLqaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* Lq+GD++ls+NG +e+ + eea ++l+++ +v L+v+ KIAA1719 508 LLQVGDRVLSINGIATEDGTMEEANQLLRDAALaHKVVLEVE 549 PF00595.14.fs: domain 4 of 7, from 463 to 549: score 40.0, E = 1.4e-10 *->evtlekedkrgglGfsikggsdkga..dkgifvsevlpGsgaAeagG ev+l + +g+G++++gg + + + v+ + p+ ++Ae+ G KIAA1719 463 EVVLCGD-PLSGFGLQLQGGIFATEtlSSPPLVCFIEPD-SPAERCG 507 rLqaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* Lq+GD++ls+NG +e+ + eea ++l+++ +v L+v+ KIAA1719 508 LLQVGDRVLSINGIATEDGTMEEANQLLRDAALaHKVVLEVE 549 PF00595.14.ls: domain 5 of 7, from 564 to 645: score 54.1, E = 4.4e-13 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+l+k + lG++i++ s k+ +++++s++ +G + A++ G L KIAA1719 564 HVKLPKK-RSVELGITISSASRKR-GEPLIISDIKKG-SVAHRTGTL 607 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD++l++++ l n + e+av++l+++ + v+L+++ KIAA1719 608 EPGDKLLAIDNIRLDNCPMEDAVQILRQCED-LVKLKIR 645 PF00595.14.fs: domain 5 of 7, from 564 to 645: score 52.1, E = 5.6e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+l+k + lG++i++ s k+ +++++s++ +G + A++ G L KIAA1719 564 HVKLPKK-RSVELGITISSASRKR-GEPLIISDIKKG-SVAHRTGTL 607 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD++l++++ l n + e+av++l+++ + v+L+++ KIAA1719 608 EPGDKLLAIDNIRLDNCPMEDAVQILRQCED-LVKLKIR 645 PF00595.14.fs: domain 6 of 7, from 663 to 742: score 60.8, E = 1.9e-16 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v l++ +g+lG++i+g ++ +i++s + + g Ae+ G++ KIAA1719 663 TVELKR--YGGPLGITISGTEEPF--DPIVISGLTKR-GLAERTGAI 704 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+Il++N+++l + ++ ea+ +l+ +g+ +vtL+++ KIAA1719 705 HVGDRILAINNVSLKGRPLSEAIHLLQVAGE-TVTLKIK 742 PF00595.14.ls: domain 6 of 7, from 663 to 742: score 62.8, E = 1e-15 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +v l++ +g+lG++i+g ++ +i++s + + g Ae+ G++ KIAA1719 663 TVELKR--YGGPLGITISGTEEPF--DPIVISGLTKR-GLAERTGAI 704 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+Il++N+++l + ++ ea+ +l+ +g+ +vtL+++ KIAA1719 705 HVGDRILAINNVSLKGRPLSEAIHLLQVAGE-TVTLKIK 742 PF00595.14.fs: domain 7 of 7, from 948 to 1027: score 31.0, E = 4.7e-08 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +vtl+k+ r+ +Gfs++ g + kg++v v p+ g+A++gG L KIAA1719 948 KVTLHKDPMRHDFGFSVSDGLLE---KGVYVHTVRPD-GPAHRGG-L 989 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q+ D++l+vN + ++++ av +l ++g+ ++ L + KIAA1719 990 QPFDRVLQVNHVRTRDFDCCLAVPLLAEAGD-VLELIIS 1027 PF00595.14.ls: domain 7 of 7, from 948 to 1027: score 33.0, E = 9.7e-07 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +vtl+k+ r+ +Gfs++ g + kg++v v p+ g+A++gG L KIAA1719 948 KVTLHKDPMRHDFGFSVSDGLLE---KGVYVHTVRPD-GPAHRGG-L 989 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* q+ D++l+vN + ++++ av +l ++g+ ++ L + KIAA1719 990 QPFDRVLQVNHVRTRDFDCCLAVPLLAEAGD-VLELIIS 1027 //