# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/pf00323.fasta.huge -Q ../query/KIAA1718.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1718, 377 aa
 vs ./tmplib.25089 library

1987128 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.1346+/-0.00677; mu= 10.3422+/- 0.461
 mean_var=165.5673+/-40.230, 0's: 0 Z-trim: 3  B-trim: 137 in 1/39
 Lambda= 0.099675

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0662  ( 1114 res)   hk01953s1                  (1114)  185 38.4  0.0023
KIAA1111  ( 1084 res)   hj04651s1                  (1084)  175 37.0  0.0061


>>KIAA0662  ( 1114 res)   hk01953s1                       (1114 aa)
 initn: 234 init1: 179 opt: 185  Z-score: 152.3  bits: 38.4 E(): 0.0023
Smith-Waterman score: 188;  44.231% identity (63.462% similar) in 104 aa overlap (269-371:1018-1110)

      240       250       260       270        280       290       
KIAA17 RTSSWIKQFDTSRFHPQDLSRSQKCIRKEGSSEISQRVQS-RNYVDSSGSSLQNGKYMQN
                                     ::. ::. .: .   .: .::: . .:   
KIAA06 GTTSTSTTPASTTPASTTPASTTPASTSTASSQASQEGSSPEPPPESHSSSLADHEYTAA
       990      1000      1010      1020      1030      1040       

       300       310       320       330       340       350       
KIAA17 SNLTSGACQISNGSLSPERPVGETSFSVPLHPTKRPASNPPPISNQATKGKRPKKGMATA
       ...: ::   . :  :  .:..   :      :.:  :   : .: :.:::: :::::::
KIAA06 GTFT-GA---QAGRTS--QPMAPGVFL-----TQRRPSASSPNNNTAAKGKRTKKGMATA
      1050            1060           1070      1080      1090      

       360       370       
KIAA17 KQRLGKILKLNRNGHARFFV
       :::::::::..:::      
KIAA06 KQRLGKILKIHRNGKLLL  
       1100      1110      

>>KIAA1111  ( 1084 res)   hj04651s1                       (1084 aa)
 initn: 255 init1: 170 opt: 175  Z-score: 144.6  bits: 37.0 E(): 0.0061
Smith-Waterman score: 193;  27.331% identity (54.019% similar) in 311 aa overlap (97-371:792-1080)

         70        80        90       100       110       120      
KIAA17 HEESQKPLNGFFTSVKSELRSRSSGYSDISESEDSGPECTALKSIFTTEESESSGDEKKQ
                                     .: .:.:  ..:.. .:  ...:::.    
KIAA11 GGPDYAALTEAPASPSTQEAIQGMLCMANLQSSSSSPATSSLQAWWTGGQDRSSGSS---
             770       780       790       800       810           

        130       140        150       160       170       180     
KIAA17 EITSNFKEESNVMRNFLQKSQK-PSRSEIPIKRECPTSTSTEEEAIQGMLSMAGLHYSTC
         .:..   ::        ::. :..   ::::     : .:::  .. :.      ..:
KIAA11 --SSGLGTVSNS-----PASQRTPGKR--PIKRPAYWRTESEEEEENASLDEQD-SLGAC
        820            830         840       850       860         

            190       200        210               220       230   
KIAA17 LQRQ---IQSTDCSGERNSLQD-PSSCHGSNH-----EVR---QLYRYDKPVECGYHVKT
       ..       : . . .  .:.. :.. ..:.      ..:    : . :.::. : .: .
KIAA11 FKDAEYIYPSLESDDDDPALKSRPKKKKNSDDAPWSPKARVTPTLPKQDRPVREGTRVAS
      870       880       890       900       910       920        

           240       250       260          270        280         
KIAA17 EDPDLRTSSWIKQFDTSRFHPQDLSRSQKC--IRKEGS-SEISQ-RVQSRNY---VDSSG
        .  : ...       ...  :.:...::   :.:.   .:. : : :. :    : .  
KIAA11 IETGLAAAA-------AKLAQQELQKAQKKKYIKKKPLLKEVEQPRPQDSNLSLTVPAPT
      930              940       950       960       970       980 

        290       300         310               320             330
KIAA17 SSLQNGKYMQNSNLTSGA--CQISNGSLSPE----RP----VGETSFSV-PLHP-----T
        .       ..: :       .  .:::. .    ::    ..... :. :. :      
KIAA11 VAATPQLVTSSSPLPPPEPKQEALSGSLADHEYTARPNAFGMAQANRSTTPMAPGVFLTQ
             990      1000      1010      1020      1030      1040 

              340       350       360       370       
KIAA17 KRPASNPPPISNQATKGKRPKKGMATAKQRLGKILKLNRNGHARFFV
       .::. .    :::: .:::::::.::::::::.:::..:::      
KIAA11 RRPSVGSQ--SNQAGQGKRPKKGLATAKQRLGRILKIHRNGKLLL  
              1050      1060      1070      1080      




377 residues in 1 query   sequences
1987128 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:14:11 2008 done: Thu Dec 18 15:14:11 2008
 Total Scan time:  0.380 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]