hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10451696/chunk_1/iprscan-20080502-10451696.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1717 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00317 26.1 0.0048 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00317 1/1 268 396 .. 1 114 [] 26.1 0.0048 Alignments of top-scoring domains: SM00317: domain 1 of 1, from 268 to 396: score 26.1, E = 0.0048 *->aklevfksk..gkGwGlratedIpkGefIleyvGeii.......... ++++v+ s + +G Gl++++ ++++ y G+ i++++ ++++ KIAA1717 268 ERVYVAESLisSAGEGLFSKVAVGPNTVMSFYNGVRIthqevdsrdw 314 .....fylfd...ciDatranggkGniarfi.......NHSCePNcelif ++++ d++++iD ++ + +++++ + +++ NHS +PNc ++ KIAA1717 315 alngnTLSLDeetVIDVPEP---YNHVSKYCaslghkaNHSFTPNC-IYD 360 vevdgfdprgasdsadpri....vifAlrdIkpGEELtidYgddyege<- ++v +pr+++ ++i++lr ++++EELt+ Yg+d ++ KIAA1717 361 MFV------------HPRFgpikCIRTLRAVEADEELTVAYGYDHSPP 396 * KIAA1717 - - //