hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10451696/chunk_1/iprscan-20080502-10451696.nocrc
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Query sequence: KIAA1717
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00856.18.fs SET domain                                      62.9      3e-17   1
PF02493.10.fs MORN repeat                                     64.4    9.9e-17   4
PF00856.18.ls SET domain                                      64.3    3.6e-16   1
PF02493.10.ls MORN repeat                                     63.3    7.5e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02493.10.fs   2/4      90   112 ..     1    23 []    23.2  2.7e-05
PF02493.10.ls   1/3      90   112 ..     1    23 []    25.2  0.00021
PF02493.10.ls   2/3     113   135 ..     1    23 []    19.0    0.015
PF02493.10.fs   3/4     114   135 ..     2    23 .]    20.1   0.0002
PF02493.10.fs   4/4     160   182 ..     1    23 []    17.0   0.0015
PF02493.10.ls   3/3     160   182 ..     1    23 []    19.0    0.016
PF00856.18.ls   1/1     266   397 ..     1   259 []    64.3  3.6e-16
PF00856.18.fs   1/1     266   397 ..     1   259 []    62.9    3e-17

Alignments of top-scoring domains:
PF02493.10.fs: domain 2 of 4, from 90 to 112: score 23.2, E = 2.7e-05
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      +eG++++G ++G+G++ + dG++   
    KIAA1717    90    FEGNFVHGEKNGRGKFFFFDGST    112  

PF02493.10.ls: domain 1 of 3, from 90 to 112: score 25.2, E = 0.00021
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      +eG++++G ++G+G++ + dG++   
    KIAA1717    90    FEGNFVHGEKNGRGKFFFFDGST    112  

PF02493.10.ls: domain 2 of 3, from 113 to 135: score 19.0, E = 0.015
                   *->YeGewknGkrhGkGvytwadGdr<-*
                       eG ++++  +G+Gvyt+ dG++   
    KIAA1717   113    LEGYYVDDALQGQGVYTYEDGGV    135  

PF02493.10.fs: domain 3 of 4, from 114 to 135: score 20.1, E = 0.0002
                   *->eGewknGkrhGkGvytwadGdr<-*
                      eG ++++  +G+Gvyt+ dG++   
    KIAA1717   114    EGYYVDDALQGQGVYTYEDGGV    135  

PF02493.10.fs: domain 4 of 4, from 160 to 182: score 17.0, E = 0.0015
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      + G++k++ rhG  + +++dG+    
    KIAA1717   160    FKGQYKDNIRHGVCWIYYPDGGS    182  

PF02493.10.ls: domain 3 of 3, from 160 to 182: score 19.0, E = 0.016
                   *->YeGewknGkrhGkGvytwadGdr<-*
                      + G++k++ rhG  + +++dG+    
    KIAA1717   160    FKGQYKDNIRHGVCWIYYPDGGS    182  

PF00856.18.ls: domain 1 of 1, from 266 to 397: score 64.3, E = 3.6e-16
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +  + ++   ++ +   G Gl++++ + ++++   Y+G  it++e++
    KIAA1717   266    ESERVYVAESLISSA--GEGLFSKVAVGPNTVMSFYNGVRITHQEVD 310  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                   +r+        ++ +g +        ld+                     
    KIAA1717   311 SRD--------WALNGNT----L--SLDE--------------------- 325  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA1717     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAt.rkGNiaR
                                                      e viD ++ +  ++ 
    KIAA1717   326 -----------------------------------ETVIDVPePYNHVSK 340  

                   Fi.......NHSCePNcevqvvfvdgedpgsdedaglepgdpri....vl
                   ++ + +++ NHS +PNc   ++ +                +pr+++ +++
    KIAA1717   341 YCaslghkaNHSFTPNC---IYDMF--------------VHPRFgpikCI 373  

                   fAlrdIpaGeELtydYgydksnge<-*
                   ++lr ++a+eELt+ Ygyd+s++    
    KIAA1717   374 RTLRAVEADEELTVAYGYDHSPPG    397  

PF00856.18.fs: domain 1 of 1, from 266 to 397: score 62.9, E = 3e-17
                   *->vqkgkwlrlegfkteikGwGlratedIpkGefiiEYpGelitseeae
                      +  + ++   ++ +   G Gl++++ + ++++   Y+G  it++e++
    KIAA1717   266    ESERVYVAESLISSA--GEGLFSKVAVGPNTVMSFYNGVRITHQEVD 310  

                   kreddllglklydndgdksldeYlfdldalfLlyEklkSfWkpYiiLPdy
                   +r+        ++ +g +        ld+                     
    KIAA1717   311 SRD--------WALNGNT----L--SLDE--------------------- 325  

                   sPlfWseeellLkGtqlletdkleleeydllaeeievvlqhklFpdveee
                                                                     
    KIAA1717     - -------------------------------------------------- -    

                   fsfedflWaasivsSRafslvegvnresensegslelviDAt.rkGNiaR
                                                      e viD ++ +  ++ 
    KIAA1717   326 -----------------------------------ETVIDVPePYNHVSK 340  

                   Fi.......NHSCePNcevqvvfvdgedpgsdedaglepgdpri....vl
                   ++ + +++ NHS +PNc   ++ +                +pr+++ +++
    KIAA1717   341 YCaslghkaNHSFTPNC---IYDMF--------------VHPRFgpikCI 373  

                   fAlrdIpaGeELtydYgydksnge<-*
                   ++lr ++a+eELt+ Ygyd+s++    
    KIAA1717   374 RTLRAVEADEELTVAYGYDHSPPG    397  

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