hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10433905/chunk_1/iprscan-20080502-10433905.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1716 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01412.9.ls Putative GTPase activating protein for Arf 212.4 9.5e-61 1 PF01412.9.fs Putative GTPase activating protein for Arf 210.5 2.8e-60 1 PF00169.19.fs PH domain 74.0 4.6e-22 1 PF00169.19.ls PH domain 76.0 1.1e-19 1 PF00023.20.fs Ankyrin repeat 59.0 1.8e-15 4 PF00023.20.ls Ankyrin repeat 57.8 3.2e-14 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 272 366 .. 1 92 [] 74.0 4.6e-22 PF00169.19.ls 1/1 272 366 .. 1 92 [] 76.0 1.1e-19 PF01412.9.ls 1/1 406 528 .. 1 137 [] 212.4 9.5e-61 PF01412.9.fs 1/1 406 528 .. 1 137 [] 210.5 2.8e-60 PF00023.20.fs 1/4 643 669 .. 7 33 .] 0.7 32 PF00023.20.ls 1/2 672 704 .. 1 33 [] 35.8 1.4e-07 PF00023.20.fs 2/4 672 704 .. 1 33 [] 33.8 1.9e-08 PF00023.20.ls 2/2 705 737 .. 1 33 [] 22.1 0.0019 PF00023.20.fs 3/4 705 737 .. 1 33 [] 20.1 0.00013 PF00023.20.fs 4/4 738 758 .. 1 21 [. 4.4 3 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 272 to 366: score 74.0, E = 4.6e-22 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL v++eG+L+k+ ++++k+w +R+f +++++L+y k+ k++ + + +L KIAA1716 272 VVMEGYLFKRAsnAFKTWNRRWFSIQNSQLVYQKKLKdALTVVVDDL 318 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< + ++v++++d++r++cFe+ ++++ + lqa+se+ r+ Wv+a q +i+ KIAA1716 319 RLCSVKPCEDIERRFCFEVLSpTK-SCMLQADSEKLRQAWVQAVQASIA 366 -* KIAA1716 - - PF00169.19.ls: domain 1 of 1, from 272 to 366: score 76.0, E = 1.1e-19 *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.kkpkgsipL v++eG+L+k+ ++++k+w +R+f +++++L+y k+ k++ + + +L KIAA1716 272 VVMEGYLFKRAsnAFKTWNRRWFSIQNSQLVYQKKLKdALTVVVDDL 318 sgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair< + ++v++++d++r++cFe+ ++++ + lqa+se+ r+ Wv+a q +i+ KIAA1716 319 RLCSVKPCEDIERRFCFEVLSpTK-SCMLQADSEKLRQAWVQAVQASIA 366 -* KIAA1716 - - PF01412.9.ls: domain 1 of 1, from 406 to 528: score 212.4, E = 9.5e-61 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + vlq+++s gN++C DCg+ p+P+WaS+nlGv+lCieCSGiHR+ KIAA1716 406 ESVLQRVQSVA-GNSQCGDCGQ-PDPRWASINLGVLLCIECSGIHRS 450 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH SkV RSltLDsW+p el+kl+ c++GN+++n+++E++ + + KIAA1716 451 L-GVHCSKV--RSLTLDSWEP-ELLKLM-CELGNSAVNQIYEAQCEGAGS 495 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++++++ ++rq +e++i++KY+ek+f+ k + + KIAA1716 496 RKPTAS-------SSRQDKEAWIKDKYVEKKFLRKAPMAP 528 PF01412.9.fs: domain 1 of 1, from 406 to 528: score 210.5, E = 2.8e-60 *->qrvlqlLrsldpgNkkCfDCgavpnPtWaSvnlGvflCieCSGiHRn + vlq+++s gN++C DCg+ p+P+WaS+nlGv+lCieCSGiHR+ KIAA1716 406 ESVLQRVQSVA-GNSQCGDCGQ-PDPRWASINLGVLLCIECSGIHRS 450 LfGvHiSkVnvRSltLDsWtpeelrklesckgGNenansfwEsnlddfsl L GvH SkV RSltLDsW+p el+kl+ c++GN+++n+++E++ + + KIAA1716 451 L-GVHCSKV--RSLTLDSWEP-ELLKLM-CELGNSAVNQIYEAQCEGAGS 495 kpkdsdaaavKCqddrqkyesfiaaKYeeklfvlkeeqee<-* ++++++ ++rq +e++i++KY+ek+f+ k + + KIAA1716 496 RKPTAS-------SSRQDKEAWIKDKYVEKKFLRKAPMAP 528 PF00023.20.fs: domain 1 of 4, from 643 to 669: score 0.7, E = 32 *->HlAalrgnlevvklLlsqGAdlnaqdd<-* H Aa+ +l + l +GA++n d KIAA1716 643 HRAARARDLPALAAALAHGAEVNWADA 669 PF00023.20.ls: domain 1 of 2, from 672 to 704: score 35.8, E = 1.4e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL A+l g+l v+++Ll++GAd+n +d KIAA1716 672 EGKTPLVQAVLGGSLIVCEFLLQNGADVNQRDS 704 PF00023.20.fs: domain 2 of 4, from 672 to 704: score 33.8, E = 1.9e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL A+l g+l v+++Ll++GAd+n +d KIAA1716 672 EGKTPLVQAVLGGSLIVCEFLLQNGADVNQRDS 704 PF00023.20.ls: domain 2 of 2, from 705 to 737: score 22.1, E = 0.0019 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLH+A l g++ v l+l++GAd +a d KIAA1716 705 RGRAPLHHATLLGRTGQVCLFLKRGADQHALDQ 737 PF00023.20.fs: domain 3 of 4, from 705 to 737: score 20.1, E = 0.00013 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ PLH+A l g++ v l+l++GAd +a d KIAA1716 705 RGRAPLHHATLLGRTGQVCLFLKRGADQHALDQ 737 PF00023.20.fs: domain 4 of 4, from 738 to 758: score 4.4, E = 3 *->dGfTPLHlAalrgnlevvklL<-* + + PL +A++ n+++v+lL KIAA1716 738 EQRDPLAIAVQAANADIVTLL 758 //