hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10331878/chunk_1/iprscan-20080502-10331878.nocrc
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Query sequence: KIAA1711
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00343                                                  84.7    1.1e-20   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00343      1/3     559   575 ..     1    17 []    26.1   0.0038
SM00343      2/3     941   957 ..     1    17 []    27.1   0.0024
SM00343      3/3    1047  1063 ..     1    17 []    31.4  0.00012

Alignments of top-scoring domains:
SM00343: domain 1 of 3, from 559 to 575: score 26.1, E = 0.0038
                   *->kCynCGkeGHiardCpk<-*
                      +C  C+ eGH+++dCp+   
    KIAA1711   559    VCSLCKREGHLKKDCPE    575  

SM00343: domain 2 of 3, from 941 to 957: score 27.1, E = 0.0024
                   *->kCynCGkeGHiardCpk<-*
                       C+ CGk GH+++dCp    
    KIAA1711   941    CCRICGKIGHFMKDCPM    957  

SM00343: domain 3 of 3, from 1047 to 1063: score 31.4, E = 0.00012
                   *->kCynCGkeGHiardCpk<-*
                      +C+ CG eGHi+++Cp+   
    KIAA1711  1047    RCFICGREGHIKKECPQ    1063 

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