hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10331878/chunk_1/iprscan-20080502-10331878.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1711 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03828.9.ls Poly(A) polymerase 161.8 1.6e-45 2 PF03828.9.fs Poly(A) polymerase 158.2 2e-44 2 PF00098.13.ls Zinc knuckle 87.9 2.9e-23 3 PF00098.13.fs Zinc knuckle 81.9 9.4e-22 3 PF01909.13.fs Nucleotidyltransferase domain 19.1 1.2e-05 1 PF01909.13.ls Nucleotidyltransferase domain 20.9 0.00064 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03828.9.ls 1/2 145 198 .. 1 67 [] 74.9 2.3e-19 PF03828.9.fs 1/2 145 198 .. 1 67 [] 73.1 2.4e-19 PF00098.13.ls 1/3 558 575 .. 1 18 [] 26.4 4e-05 PF00098.13.fs 1/3 558 575 .. 1 18 [] 24.4 1.3e-05 PF01909.13.fs 1/1 621 709 .. 1 117 [] 19.1 1.2e-05 PF01909.13.ls 1/1 621 709 .. 1 117 [] 20.9 0.00064 PF03828.9.fs 2/2 828 881 .. 1 67 [] 85.1 1.3e-22 PF03828.9.ls 2/2 828 881 .. 1 67 [] 86.9 5.8e-23 PF00098.13.ls 2/3 940 957 .. 1 18 [] 28.7 1.7e-05 PF00098.13.fs 2/3 940 957 .. 1 18 [] 26.7 2.9e-06 PF00098.13.ls 3/3 1046 1063 .. 1 18 [] 32.7 1.2e-06 PF00098.13.fs 3/3 1046 1063 .. 1 18 [] 30.8 2.1e-07 Alignments of top-scoring domains: PF03828.9.ls: domain 1 of 2, from 145 to 198: score 74.9, E = 2.3e-19 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr ++G+L++e++++Y++ eF+++d vIsir ++ ++s+e k+w+kkr KIAA1711 145 PVGQLWVELLRFYAL-EFNLADLVISIR---VKELVSRELKDWPKKR 187 vlnnrrpspLcIeDPfdtsn<-* ++IeDP+ ++ KIAA1711 188 ---------IAIEDPYSVKR 198 PF03828.9.fs: domain 1 of 2, from 145 to 198: score 73.1, E = 2.4e-19 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr ++G+L++e++++Y++ eF+++d vIsir ++ ++s+e k+w+kkr KIAA1711 145 PVGQLWVELLRFYAL-EFNLADLVISIR---VKELVSRELKDWPKKR 187 vlnnrrpspLcIeDPfdtsn<-* ++IeDP+ ++ KIAA1711 188 ---------IAIEDPYSVKR 198 PF00098.13.ls: domain 1 of 3, from 558 to 575: score 26.4, E = 4e-05 *->rkCynCGkpGHiardCpk<-* ++C C+++GH+++dCp+ KIAA1711 558 VVCSLCKREGHLKKDCPE 575 PF00098.13.fs: domain 1 of 3, from 558 to 575: score 24.4, E = 1.3e-05 *->rkCynCGkpGHiardCpk<-* ++C C+++GH+++dCp+ KIAA1711 558 VVCSLCKREGHLKKDCPE 575 PF01909.13.fs: domain 1 of 1, from 621 to 709: score 19.1, E = 1.2e-05 *->lkkikeilkelygavaevylfGSyarGtylpgdSDIDllvvspdpvd ++ ++++ ++ + ++ lfGS +G + SD+D++ + ++ + KIAA1711 621 RQNLESFIRQDFP-GTKLSLFGSSKNGFGFKQ-SDLDVCMTINGLET 665 eefalfslarlgkrikervkrleelaeiekeleellglevDlvtrekler ++ ++ ++ ++el ++l ++ l+ + ++ KIAA1711 666 -------------------AEGLDCVRTIEELARVLRKHSGLRNILPIT- 695 ilektaplvrreileervll<-* + ++++++++ KIAA1711 696 ------TAKVPIVKFFHLRS 709 PF01909.13.ls: domain 1 of 1, from 621 to 709: score 20.9, E = 0.00064 *->lkkikeilkelygavaevylfGSyarGtylpgdSDIDllvvspdpvd ++ ++++ ++ + ++ lfGS +G + SD+D++ + ++ + KIAA1711 621 RQNLESFIRQDFP-GTKLSLFGSSKNGFGFKQ-SDLDVCMTINGLET 665 eefalfslarlgkrikervkrleelaeiekeleellglevDlvtrekler ++ ++ ++ ++el ++l ++ l+ + ++ KIAA1711 666 -------------------AEGLDCVRTIEELARVLRKHSGLRNILPIT- 695 ilektaplvrreileervll<-* + ++++++++ KIAA1711 696 ------TAKVPIVKFFHLRS 709 PF03828.9.fs: domain 2 of 2, from 828 to 881: score 85.1, E = 1.3e-22 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr ++G+L+l+++++Y++ eFD++++vIsir ++s+l+ +k+w++k+ KIAA1711 828 SVGQLWLGLLRFYTE-EFDFKEHVISIR---RKSLLTTFKKQWTSKY 870 vlnnrrpspLcIeDPfdtsn<-* ++IeDPfd+++ KIAA1711 871 ---------IVIEDPFDLNH 881 PF03828.9.ls: domain 2 of 2, from 828 to 881: score 86.9, E = 5.8e-23 *->nLGvLLleFFeyYgrreFDyrdvvIsirdGyqgsylsKeekgwdkkr ++G+L+l+++++Y++ eFD++++vIsir ++s+l+ +k+w++k+ KIAA1711 828 SVGQLWLGLLRFYTE-EFDFKEHVISIR---RKSLLTTFKKQWTSKY 870 vlnnrrpspLcIeDPfdtsn<-* ++IeDPfd+++ KIAA1711 871 ---------IVIEDPFDLNH 881 PF00098.13.ls: domain 2 of 3, from 940 to 957: score 28.7, E = 1.7e-05 *->rkCynCGkpGHiardCpk<-* r C+ CGk GH+++dCp KIAA1711 940 RCCRICGKIGHFMKDCPM 957 PF00098.13.fs: domain 2 of 3, from 940 to 957: score 26.7, E = 2.9e-06 *->rkCynCGkpGHiardCpk<-* r C+ CGk GH+++dCp KIAA1711 940 RCCRICGKIGHFMKDCPM 957 PF00098.13.ls: domain 3 of 3, from 1046 to 1063: score 32.7, E = 1.2e-06 *->rkCynCGkpGHiardCpk<-* ++C+ CG++GHi+++Cp+ KIAA1711 1046 KRCFICGREGHIKKECPQ 1063 PF00098.13.fs: domain 3 of 3, from 1046 to 1063: score 30.8, E = 2.1e-07 *->rkCynCGkpGHiardCpk<-* ++C+ CG++GHi+++Cp+ KIAA1711 1046 KRCFICGREGHIKKECPQ 1063 //