hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10314036/chunk_1/iprscan-20080502-10314036.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1710 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 340.8 9.2e-98 12 SM00349 93.8 2.1e-23 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 59 120 .. 1 62 [] 93.8 2.1e-23 SM00355 1/12 183 205 .. 1 23 [] 29.1 0.00062 SM00355 2/12 211 233 .. 1 23 [] 26.6 0.0034 SM00355 3/12 239 261 .. 1 23 [] 27.2 0.0023 SM00355 4/12 267 289 .. 1 23 [] 26.0 0.005 SM00355 5/12 295 317 .. 1 23 [] 31.2 0.00014 SM00355 6/12 323 345 .. 1 23 [] 30.6 0.00021 SM00355 7/12 351 373 .. 1 23 [] 28.8 0.00073 SM00355 8/12 379 401 .. 1 23 [] 26.0 0.005 SM00355 9/12 407 429 .. 1 23 [] 29.0 0.00067 SM00355 10/12 435 457 .. 1 23 [] 28.0 0.0013 SM00355 11/12 463 485 .. 1 23 [] 27.7 0.0016 SM00355 12/12 491 513 .. 1 23 [] 30.5 0.00023 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 59 to 120: score 93.8, E = 2.1e-23 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk VtFeD+A+++++EEW+ LD+aQr+LYRdVM+ENY+n+vSL+ f++ KIAA1710 59 VTFEDMAMYLTREEWRPLDAAQRDLYRDVMQENYGNVVSLD-FEIRS 104 p.dliskLEqgeEpwi<-* +++ +k+E e + KIAA1710 105 EnEVNPKQEISEDVQF 120 SM00355: domain 1 of 12, from 183 to 205: score 29.1, E = 0.00062 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ Cgk fs+ ++L+rH+++H KIAA1710 183 HICSH-CGKAFSQIsDLNRHQKTH 205 SM00355: domain 2 of 12, from 211 to 233: score 26.6, E = 0.0034 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC + Cgk fs+ ++L++H+r+H KIAA1710 211 YKCYE-CGKGFSRSsHLIQHQRTH 233 SM00355: domain 3 of 12, from 239 to 261: score 27.2, E = 0.0023 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgksf + ++L++H+ +H KIAA1710 239 YDCNE-CGKSFGRSsHLIQHQTIH 261 SM00355: domain 4 of 12, from 267 to 289: score 26.0, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgksf++ ++L++H+r+H KIAA1710 267 HKCNE-CGKSFCRLsHLIQHQRTH 289 SM00355: domain 5 of 12, from 295 to 317: score 31.2, E = 0.00014 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgksfs+ ++L +H+r+H KIAA1710 295 YECEE-CGKSFSRSsHLAQHQRTH 317 SM00355: domain 6 of 12, from 323 to 345: score 30.6, E = 0.00021 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+ fs +++L++H+rvH KIAA1710 323 YECNE-CGRGFSERsDLIKHYRVH 345 SM00355: domain 7 of 12, from 351 to 373: score 28.8, E = 0.00073 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+ ++L+rH r H KIAA1710 351 YKCDE-CGKNFSQNsDLVRHRRAH 373 SM00355: domain 8 of 12, from 379 to 401: score 26.0, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg+ fs+ ++L++H+r+H KIAA1710 379 YHCNE-CGENFSRIsHLVQHQRTH 401 SM00355: domain 9 of 12, from 407 to 429: score 29.0, E = 0.00067 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+ Cgksfs+ ++L+ H+++H KIAA1710 407 YECNA-CGKSFSRSsHLITHQKIH 429 SM00355: domain 10 of 12, from 435 to 457: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C +sf +++L++H+r+H KIAA1710 435 YECNE-CWRSFGERsDLIKHQRTH 457 SM00355: domain 11 of 12, from 463 to 485: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f++ ++L+ H+rvH KIAA1710 463 YECVQ-CGKGFTQSsNLITHQRVH 485 SM00355: domain 12 of 12, from 491 to 513: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ C ksfs+ +aL++H rvH KIAA1710 491 YECTE-CEKSFSRSsALIKHKRVH 513 //