hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-10280975/chunk_1/iprscan-20080502-10280975.nocrc
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Query sequence: KIAA1708
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 552.5   1.7e-161   1
SM00320                                                 194.1    1.3e-53   7

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1       3   375 ..     1   404 []   552.5 1.7e-161
SM00320     1/7    1319  1356 ..     1    46 []    40.4  2.4e-07
SM00320     2/7    1359  1397 ..     1    46 []    25.2   0.0092
SM00320     3/7    1423  1461 ..     1    46 []    18.3     0.62
SM00320     4/7    1464  1506 ..     1    46 []    27.3   0.0021
SM00320     5/7    1514  1552 ..     1    46 []    17.8     0.74
SM00320     6/7    1555  1595 ..     1    46 []    28.6  0.00089
SM00320     7/7    1598  1635 ..     1    46 []    36.5  3.6e-06

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 3 to 375: score 552.5, E = 1.7e-161
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                      ++++rVavR+   RP++ +Ek e+    ++ + +v++++++v + ++
    KIAA1708     3    ESSVRVAVRI---RPQLAKEKIEG----CHICTSVtpgepQVFLGkd 42   

                   ..FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQ
                   + FtFD+VF      d ++ Qe+++  ++  L++ +++GYN+ T+FAYGQ
    KIAA1708    43 kaFTFDYVF------DIDSQQEQIYIQCIEKLIEGCFEGYNA-TVFAYGQ 85   

                   TGSGKTyTMsGtptdpgilsndla.ditpdepGiIPRaledlFekide..
                   TG+GKTyTM+             + +i ++e+GiI Ra+++lF++i+e++
    KIAA1708    86 TGAGKTYTMGTGF----------DvNIVEEELGIISRAVKHLFKSIEEkk 125  

                   ............fsVkvSylEIYNEkirDLLspspenSksrGkha.kqss
                   +   +++ + ++f+V +++lE+YNE++ DL +++++         +  s+
    KIAA1708   126 hiaiknglpapdFKVNAQFLELYNEEVLDLFDTTRD--------IdAKSK 167  

                   kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle
                   k + ri+Ed++               gg+y vG+t+++V++  e++++l+
    KIAA1708   168 KSNIRIHEDST---------------GGIYTVGVTTRTVNTESEMMQCLK 202  

                   rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadek.......te
                   +G+ +Rt+a+T mN +SSRSHaiFti++ q+++  +i++++ ++++  +e
    KIAA1708   203 LGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQIDADNatdnkiiSE 252  

                   sstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLla
                   s + ++ e ++++k+++VDLAGSER ++Tg  a+G+R+kE+++IN +Lla
    KIAA1708   253 SAQMNEFE-TLTAKFHFVDLAGSERLKRTG--ATGERAKEGISINCGLLA 299  

                   LGnVInALaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNs
                   LGnVI+AL+d             ++++ +H+PYRDSKLTrLLQdSLGGNs
    KIAA1708   300 LGNVISALGD-------------KSKRATHVPYRDSKLTRLLQDSLGGNS 336  

                   KTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                    T+MIa+vSPs+ ++ ETl+TL++A+Ra++Iknk+ vn+   
    KIAA1708   337 QTIMIACVSPSDRDFMETLNTLKYANRARNIKNKVMVNQ    375  

SM00320: domain 1 of 7, from 1319 to 1356: score 40.4, E = 2.4e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++++ +gHt+  +V++v+  +d        ll++gs+D+t+++W
    KIAA1708  1319    PlQCIHIAEGHTK--AVLCVDSTDD--------LLFTGSkDRTCKVW 1355 

                   d<-*
                   +   
    KIAA1708  1356 N    1356 

SM00320: domain 2 of 7, from 1359 to 1397: score 25.2, E = 0.0092
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ +++l gH +   V sv+++         +l+++ s+   i++W
    KIAA1708  1359    TgQEIMSLGGHPN--NVVSVKYCNYT------SLVFTVStSY-IKVW 1396 

                   d<-*
                   d   
    KIAA1708  1397 D    1397 

SM00320: domain 3 of 7, from 1423 to 1461: score 18.3, E = 0.62
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ +  ++  ++   ++ +a +p+g      ++l+++s++  +r+W
    KIAA1708  1423    StSRTVAIPSGEN--QINQIALNPTG------TFLYAASgNA-VRMW 1460 

                   d<-*
                   d   
    KIAA1708  1461 D    1461 

SM00320: domain 4 of 7, from 1464 to 1506: score 27.3, E = 0.0021
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        + + +l+gH g  pV ++++++ +   ++ +l+++gs+D+ i+++
    KIAA1708  1464    RfQSTGKLTGHLG--PVMCLTVDQIS---SGQDLIITGSkDHYIKMF 1505 

                   d<-*
                   d   
    KIAA1708  1506 D    1506 

SM00320: domain 5 of 7, from 1514 to 1552: score 17.8, E = 0.74
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t ++++ +++ H +  ++ ++++  d         l+sgs+D+ i+ 
    KIAA1708  1514    TvSPTHNFEpPHYD--GIEALTIQGD--------NLFSGSrDNGIKK 1550 

                   Wd<-*
                   Wd   
    KIAA1708  1551 WD    1552 

SM00320: domain 6 of 7, from 1555 to 1595: score 28.6, E = 0.00089
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++ ll+  +++H++  +V+++ + pd+       +l+sg++ g +++
    KIAA1708  1555    QkDLLQQVPnAHKD--WVCALGVVPDH------PVLLSGCrGGILKV 1593 

                   Wd<-*
                   W+   
    KIAA1708  1594 WN    1595 

SM00320: domain 7 of 7, from 1598 to 1635: score 36.5, E = 3.6e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t  ++ ++kgH++  p+++++++++        +++++ +D+t+r+W
    KIAA1708  1598    TfMPVGEMKGHDS--PINAICVNST--------HIFTAAdDRTVRIW 1634 

                   d<-*
                   +   
    KIAA1708  1635 K    1635 

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