hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10280975/chunk_1/iprscan-20080502-10280975.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1708 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 568.6 5.7e-168 1 PF00225.13.fs Kinesin motor domain 566.9 1.9e-167 1 PF00400.22.ls WD domain, G-beta repeat 186.4 6.5e-53 7 PF00400.22.fs WD domain, G-beta repeat 172.8 7.9e-49 7 PF02996.8.fs Prefoldin subunit 26.7 5.3e-07 5 PF06696.2.ls Streptococcal surface antigen repeat 30.2 6.5e-06 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.fs 1/1 11 368 .. 1 424 [] 566.9 1.9e-167 PF00225.13.ls 1/1 11 368 .. 1 424 [] 568.6 5.7e-168 PF00400.22.ls 1/7 1320 1356 .. 1 38 [] 38.8 1.7e-08 PF00400.22.fs 1/7 1320 1356 .. 1 38 [] 36.9 2e-09 PF00400.22.fs 2/7 1360 1397 .. 1 38 [] 19.5 0.00016 PF00400.22.fs 3/7 1424 1461 .. 1 38 [] 14.1 0.0054 PF00400.22.ls 4/7 1465 1506 .. 1 38 [] 30.1 7e-06 PF00400.22.fs 4/7 1465 1506 .. 1 38 [] 28.1 5.8e-07 PF00400.22.fs 5/7 1515 1552 .. 1 38 [] 13.6 0.0073 PF00400.22.fs 6/7 1557 1595 .. 1 38 [] 26.5 1.7e-06 PF00400.22.ls 6/7 1557 1595 .. 1 38 [] 28.5 2.3e-05 PF00400.22.ls 7/7 1599 1635 .. 1 38 [] 36.0 1.2e-07 PF00400.22.fs 7/7 1599 1635 .. 1 38 [] 34.1 1.2e-08 Alignments of top-scoring domains: PF00225.13.fs: domain 1 of 1, from 11 to 368: score 566.9, E = 1.9e-167 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe R+RP +++Ek +g++++ +++ + ++ gk+k FtFD+VFd + KIAA1708 11 RIRPQLAKEKIEGCHICT---SVTPGEPQVFlGKDKAFTFDYVFDID 54 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe + qe++y+++++ l+e ++eGyN+t+FAYGQTG+GKTYTM+ KIAA1708 55 SQ---------QEQIYIQCIEKLIEGCFEGYNATVFAYGQTGAGKTYTMG 95 Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP ++n eee Gii Ra+++lF++iee k+ ++++ KIAA1708 96 T------GfDVNI------VEEELGIISRAVKHLFKSIEEKKHIAIKN-- 131 klnekgwellncqetligvsfdtrglsSdlyv.edlefsvkvSylEIYNE +++++ +f+v +++lE+YNE KIAA1708 132 ------------------------------GLpAP-DFKVNAQFLELYNE 150 kirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLte ++ DL ++++ +++k+kk+++ri+eD+ +G +y +G+t KIAA1708 151 EVLDLFDTTRD-------IDAKSKKSNIRIHEDSTGG-----IYTVGVTT 188 veVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdtt +V++++e++++L+lG+ +Rt+asT+mN +SSRSHaiFti+v q++ +++ KIAA1708 189 RTVNTESEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQ 238 gsvvtgkd........nsgeesvrvskLnLVDLAGSERaskTgatgAggr ++ + +d++ +++ +++e ++++k+++VDLAGSER+++Tg A+g+ KIAA1708 239 IDADNATDnkiisesaQMNEFETLTAKFHFVDLAGSERLKRTG---ATGE 285 RLkEaanINkSLsaLGnVInALadnq.kssHiPYRDSKLTrLLQDSLGGG R kE+ +IN L+aLGnVI+AL+d++++++H+PYRDSKLTrLLQDSLGG KIAA1708 286 RAKEGISINCGLLALGNVISALGDKSkRATHVPYRDSKLTRLLQDSLGG- 334 DNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* Ns+T+MIa++SPs+ +++ETL+TL++A+RA+nIk KIAA1708 335 -NSQTIMIACVSPSDR----DFMETLNTLKYANRARNIK 368 PF00225.13.ls: domain 1 of 1, from 11 to 368: score 568.6, E = 5.7e-168 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe R+RP +++Ek +g++++ +++ + ++ gk+k FtFD+VFd + KIAA1708 11 RIRPQLAKEKIEGCHICT---SVTPGEPQVFlGKDKAFTFDYVFDID 54 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe + qe++y+++++ l+e ++eGyN+t+FAYGQTG+GKTYTM+ KIAA1708 55 SQ---------QEQIYIQCIEKLIEGCFEGYNATVFAYGQTGAGKTYTMG 95 Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP ++n eee Gii Ra+++lF++iee k+ ++++ KIAA1708 96 T------GfDVNI------VEEELGIISRAVKHLFKSIEEKKHIAIKN-- 131 klnekgwellncqetligvsfdtrglsSdlyv.edlefsvkvSylEIYNE +++++ +f+v +++lE+YNE KIAA1708 132 ------------------------------GLpAP-DFKVNAQFLELYNE 150 kirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkGLte ++ DL ++++ +++k+kk+++ri+eD+ +G +y +G+t KIAA1708 151 EVLDLFDTTRD-------IDAKSKKSNIRIHEDSTGG-----IYTVGVTT 188 veVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdtt +V++++e++++L+lG+ +Rt+asT+mN +SSRSHaiFti+v q++ +++ KIAA1708 189 RTVNTESEMMQCLKLGALSRTTASTQMNVQSSRSHAIFTIHVCQTRVCPQ 238 gsvvtgkd........nsgeesvrvskLnLVDLAGSERaskTgatgAggr ++ + +d++ +++ +++e ++++k+++VDLAGSER+++Tg A+g+ KIAA1708 239 IDADNATDnkiisesaQMNEFETLTAKFHFVDLAGSERLKRTG---ATGE 285 RLkEaanINkSLsaLGnVInALadnq.kssHiPYRDSKLTrLLQDSLGGG R kE+ +IN L+aLGnVI+AL+d++++++H+PYRDSKLTrLLQDSLGG KIAA1708 286 RAKEGISINCGLLALGNVISALGDKSkRATHVPYRDSKLTRLLQDSLGG- 334 DNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* Ns+T+MIa++SPs+ +++ETL+TL++A+RA+nIk KIAA1708 335 -NSQTIMIACVSPSDR----DFMETLNTLKYANRARNIK 368 PF00400.22.ls: domain 1 of 7, from 1320 to 1356: score 38.8, E = 1.7e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+++ +gHt++V cv+ d ll++gS D+t+k+W+ KIAA1708 1320 LQCIhIAeGHTKAVLCVDSTDD---LLFTGSKDRTCKVWN 1356 PF00400.22.fs: domain 1 of 7, from 1320 to 1356: score 36.9, E = 2e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+++ +gHt++V cv+ d ll++gS D+t+k+W+ KIAA1708 1320 LQCIhIAeGHTKAVLCVDSTDD---LLFTGSKDRTCKVWN 1356 PF00400.22.fs: domain 2 of 7, from 1360 to 1397: score 19.5, E = 0.00016 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + +l+gH + V +v+++ +l+++ S ik+Wd KIAA1708 1360 GQEImSLgGHPNNVVSVKYCNY-TSLVFTVST-SYIKVWD 1397 PF00400.22.fs: domain 3 of 7, from 1424 to 1461: score 14.1, E = 0.0054 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + ++ ++ ++ +a +p g++l +S + +++Wd KIAA1708 1424 TSRTvAIpSGENQINQIALNPT-GTFLYAASG-NAVRMWD 1461 PF00400.22.ls: domain 4 of 7, from 1465 to 1506: score 30.1, E = 7e-06 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* + ++ l+gH ++V+c+ +++ ++++ l+++gS D+ ik++d KIAA1708 1465 FQSTgKLtGHLGPVMCLTVDQIssGQDLIITGSKDHYIKMFD 1506 PF00400.22.fs: domain 4 of 7, from 1465 to 1506: score 28.1, E = 5.8e-07 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* + ++ l+gH ++V+c+ +++ ++++ l+++gS D+ ik++d KIAA1708 1465 FQSTgKLtGHLGPVMCLTVDQIssGQDLIITGSKDHYIKMFD 1506 PF00400.22.fs: domain 5 of 7, from 1515 to 1552: score 13.6, E = 0.0073 *->geck.vl..gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ +++ H ++++++ + d l+sgSrD+ ik Wd KIAA1708 1515 VSPThNFepPHYDGIEALTIQGD---NLFSGSRDNGIKKWD 1552 PF00400.22.fs: domain 6 of 7, from 1557 to 1595: score 26.5, E = 1.7e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++v ++H+++V+++ ++pd p+l+sg+r g +k+W+ KIAA1708 1557 DLLQqVPnAHKDWVCALGVVPD-HPVLLSGCRGGILKVWN 1595 PF00400.22.ls: domain 6 of 7, from 1557 to 1595: score 28.5, E = 2.3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++v ++H+++V+++ ++pd p+l+sg+r g +k+W+ KIAA1708 1557 DLLQqVPnAHKDWVCALGVVPD-HPVLLSGCRGGILKVWN 1595 PF00400.22.ls: domain 7 of 7, from 1599 to 1635: score 36.0, E = 1.2e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++ +gH s++++++++ +++++ +D+t++iW+ KIAA1708 1599 FMPVgEMkGHDSPINAICVNST---HIFTAADDRTVRIWK 1635 PF00400.22.fs: domain 7 of 7, from 1599 to 1635: score 34.1, E = 1.2e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++++ +gH s++++++++ +++++ +D+t++iW+ KIAA1708 1599 FMPVgEMkGHDSPINAICVNST---HIFTAADDRTVRIWK 1635 //