hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10263202/chunk_1/iprscan-20080502-10263202.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1707 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02902.9.fs Ulp1 protease family, C-terminal cataly 196.5 1.6e-60 1 PF02902.9.ls Ulp1 protease family, C-terminal cataly 198.4 1.6e-56 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02902.9.fs 1/1 466 742 .. 1 245 [] 196.5 1.6e-60 PF02902.9.ls 1/1 466 742 .. 1 245 [] 198.4 1.6e-56 Alignments of top-scoring domains: PF02902.9.fs: domain 1 of 1, from 466 to 742: score 196.5, E = 1.6e-60 *->isitmrdlktltkkewlnDtiidfylrylaerllpdPilkekftsal +t++dl++l+++e+lnD iidfyl+yl++++ +++ ++ KIAA1707 466 LGVTNEDLECLEEGEFLNDVIIDFYLKYLILEK------ASDELVER 506 thffnsFfytklksrfkwgd.e......kdelykdvkrgtargekkkkkd +h+f+sFfy++l+++ +++++ + ++++k+v+++t ++ KIAA1707 507 SHIFSSFFYKCLTRKENNLTeDnpnlsmAQRRHKRVRTWT------RHIN 550 lfdkDyiyvPinedgkksHWvllvIdlpdkkk.................. +f+kDyi+vP+ne + HW+l+vI+ p + ++ +++ +++++ ++ KIAA1707 551 IFNKDYIFVPVNESS---HWYLAVICFPWLEEavyedfpqtvsqqsqaqq 597 ......................................kdqstivilDSl +++++++ +++ +++++ + + +++++++++ + +++ ++ ++i ilDSl KIAA1707 598 sqndnktidndlrttstlslsaedsqstesnmsvpkkmCKRPCILILDSL 647 islntekavktitalarplsdelpylkrerlslkksfdkkswdlqpfeik + + v +l+++l++e++ + f+k++++ KIAA1707 648 KAASVQNTVQ---NLREYLEVEWEVKLKT----HRQFSKTNMV------- 683 rltmkvPQQpngyDCGiyvlkfielfaegppqdfmttindkklkdlksfr l++kvP+Q n++DCG+y l+++e f+ +p+ f ++i + k+ ++ KIAA1707 684 DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIH--LEKWFPRHV 731 kklakeiyeel<-* +k+++e+++el KIAA1707 732 IKTKREDIREL 742 PF02902.9.ls: domain 1 of 1, from 466 to 742: score 198.4, E = 1.6e-56 *->isitmrdlktltkkewlnDtiidfylrylaerllpdPilkekftsal +t++dl++l+++e+lnD iidfyl+yl++++ +++ ++ KIAA1707 466 LGVTNEDLECLEEGEFLNDVIIDFYLKYLILEK------ASDELVER 506 thffnsFfytklksrfkwgd.e......kdelykdvkrgtargekkkkkd +h+f+sFfy++l+++ +++++ + ++++k+v+++t ++ KIAA1707 507 SHIFSSFFYKCLTRKENNLTeDnpnlsmAQRRHKRVRTWT------RHIN 550 lfdkDyiyvPinedgkksHWvllvIdlpdkkk.................. +f+kDyi+vP+ne + HW+l+vI+ p + ++ +++ +++++ ++ KIAA1707 551 IFNKDYIFVPVNESS---HWYLAVICFPWLEEavyedfpqtvsqqsqaqq 597 ......................................kdqstivilDSl +++++++ +++ +++++ + + +++++++++ + +++ ++ ++i ilDSl KIAA1707 598 sqndnktidndlrttstlslsaedsqstesnmsvpkkmCKRPCILILDSL 647 islntekavktitalarplsdelpylkrerlslkksfdkkswdlqpfeik + + v +l+++l++e++ + f+k++++ KIAA1707 648 KAASVQNTVQ---NLREYLEVEWEVKLKT----HRQFSKTNMV------- 683 rltmkvPQQpngyDCGiyvlkfielfaegppqdfmttindkklkdlksfr l++kvP+Q n++DCG+y l+++e f+ +p+ f ++i + k+ ++ KIAA1707 684 DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIH--LEKWFPRHV 731 kklakeiyeel<-* +k+++e+++el KIAA1707 732 IKTKREDIREL 742 //