hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10245591/chunk_1/iprscan-20080502-10245591.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1706 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00633.13.fs Helix-hairpin-helix motif 41.7 1.7e-11 3 PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa 41.0 2.3e-11 1 PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa 43.0 9.6e-10 1 PF00633.13.ls Helix-hairpin-helix motif 42.6 1.2e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00633.13.fs 1/3 42 71 .. 1 30 [] 26.8 4.6e-07 PF00633.13.ls 1/2 42 71 .. 1 30 [] 28.9 1.7e-05 PF03372.13.fs 1/1 265 542 .. 1 198 [] 41.0 2.3e-11 PF03372.13.ls 1/1 265 542 .. 1 198 [] 43.0 9.6e-10 Alignments of top-scoring domains: PF00633.13.fs: domain 1 of 3, from 42 to 71: score 26.8, E = 4.6e-07 *->slegikpasreeLlalpGVGpktAeaIlsy<-* + +i +a++eeL++lpGV +++A++I +y KIAA1706 42 ERLNINTATEEELMTLPGVTRAVARSIVEY 71 PF00633.13.ls: domain 1 of 2, from 42 to 71: score 28.9, E = 1.7e-05 *->slegikpasreeLlalpGVGpktAeaIlsy<-* + +i +a++eeL++lpGV +++A++I +y KIAA1706 42 ERLNINTATEEELMTLPGVTRAVARSIVEY 71 PF03372.13.fs: domain 1 of 1, from 265 to 542: score 41.0, E = 2.3e-11 *->lkiltwNvnglra.l.s.......llellk.edpDvicLQEvklsp. l+++twN +g++ ++ ++++ ++ ++ l ++++ ++++QE +++ KIAA1706 265 LRLATWNLQGCSVeKaNnpgvrevVCMTLLeNSIKLLAVQELLDREa 311 s.ll.l.lg.gyvytgfgg.gggkgGvailsklplvsvi.gi........ +++ +l+++ + +g +++ a++ +p +++ +g + + + KIAA1706 312 LeKFcTeLNqPTLPNIRKWkGPRGCWKAVVAEKPSNQLQkGAgyagflwd 361 ...........................dli.rvilasgt.fvvvntHlpa + + ++ ++ ++++++++++ ++ + +++ ++++vn Hl+a KIAA1706 362 aaagmelrdagsqesspsnghgklagpSPYlGRFKVGSHdLTLVNLHLAA 411 gg............rldeRlaqyaelldflsfksdpvilcGDfNarpdei +++++++++++ + +++++l++ l+ + ++vi++GDf pd+ KIAA1706 412 LTllgsenpsknhsDGHRLASFAQTLQETLK-GEKDVIILGDFGQGPDSN 460 ds.llk.igkstlelpitfppTywsyrgtsekkntgsrlDrilvsg.ll. d++ l++ + ++ l+ + +T+ s+ + + lD i+ s++l++ KIAA1706 461 DYdILRkEKFHH--LIPAHTFTNISTKN----PQGSKSLDNIWISKsLKk 504 rv.il.ille...............vlgSDHrPVlatl<-* ++ + ++ +++ +++ + + +S H+PVla++ KIAA1706 505 VFtGHwAVVRegltnpwipdnwswgGVASEHCPVLAEF 542 PF03372.13.ls: domain 1 of 1, from 265 to 542: score 43.0, E = 9.6e-10 *->lkiltwNvnglra.l.s.......llellk.edpDvicLQEvklsp. l+++twN +g++ ++ ++++ ++ ++ l ++++ ++++QE +++ KIAA1706 265 LRLATWNLQGCSVeKaNnpgvrevVCMTLLeNSIKLLAVQELLDREa 311 s.ll.l.lg.gyvytgfgg.gggkgGvailsklplvsvi.gi........ +++ +l+++ + +g +++ a++ +p +++ +g + + + KIAA1706 312 LeKFcTeLNqPTLPNIRKWkGPRGCWKAVVAEKPSNQLQkGAgyagflwd 361 ...........................dli.rvilasgt.fvvvntHlpa + + ++ ++ ++++++++++ ++ + +++ ++++vn Hl+a KIAA1706 362 aaagmelrdagsqesspsnghgklagpSPYlGRFKVGSHdLTLVNLHLAA 411 gg............rldeRlaqyaelldflsfksdpvilcGDfNarpdei +++++++++++ + +++++l++ l+ + ++vi++GDf pd+ KIAA1706 412 LTllgsenpsknhsDGHRLASFAQTLQETLK-GEKDVIILGDFGQGPDSN 460 ds.llk.igkstlelpitfppTywsyrgtsekkntgsrlDrilvsg.ll. d++ l++ + ++ l+ + +T+ s+ + + lD i+ s++l++ KIAA1706 461 DYdILRkEKFHH--LIPAHTFTNISTKN----PQGSKSLDNIWISKsLKk 504 rv.il.ille...............vlgSDHrPVlatl<-* ++ + ++ +++ +++ + + +S H+PVla++ KIAA1706 505 VFtGHwAVVRegltnpwipdnwswgGVASEHCPVLAEF 542 //