hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-10195015/chunk_1/iprscan-20080502-10195015.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1703 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 240.9 2.6e-69 12 PF00096.16.fs Zinc finger, C2H2 type 217.2 3.4e-62 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 2/12 361 385 .. 1 24 [] 22.8 0.00019 PF00096.16.ls 2/12 361 385 .. 1 24 [] 24.8 0.00028 PF00096.16.ls 3/12 403 426 .. 1 24 [] 20.3 0.0064 PF00096.16.ls 5/12 484 506 .. 1 24 [] 18.0 0.031 PF00096.16.ls 6/12 512 535 .. 1 24 [] 24.9 0.00026 PF00096.16.fs 6/12 512 535 .. 1 24 [] 23.0 0.00018 PF00096.16.fs 7/12 545 567 .. 1 24 [] 27.2 1.5e-05 PF00096.16.ls 7/12 545 567 .. 1 24 [] 29.2 1.3e-05 PF00096.16.ls 8/12 573 597 .. 1 24 [] 25.4 0.00019 PF00096.16.fs 8/12 573 597 .. 1 24 [] 23.4 0.00014 PF00096.16.fs 10/12 631 653 .. 1 24 [] 24.8 6.1e-05 PF00096.16.ls 10/12 631 653 .. 1 24 [] 26.8 7e-05 PF00096.16.ls 12/12 690 713 .. 1 24 [] 20.0 0.008 Alignments of top-scoring domains: PF00096.16.fs: domain 2 of 12, from 361 to 385: score 22.8, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrt..H<-* + C CgksF + snL++Hl + +H KIAA1703 361 FHCL-LCGKSFYTESNLHQHLASagH 385 PF00096.16.ls: domain 2 of 12, from 361 to 385: score 24.8, E = 0.00028 *->ykCpfdCgksFsrksnLkrHlrt..H<-* + C CgksF + snL++Hl + +H KIAA1703 361 FHCL-LCGKSFYTESNLHQHLASagH 385 PF00096.16.ls: domain 3 of 12, from 403 to 426: score 20.3, E = 0.0064 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kC +C + F + nL H++ +H KIAA1703 403 FKCV-KCTEPFDSEQNLFLHIKGqH 426 PF00096.16.ls: domain 5 of 12, from 484 to 506: score 18.0, E = 0.031 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+ + + ++ ++H ++H KIAA1703 484 FKCK-ICHFATAQLGDARNHVKRH 506 PF00096.16.ls: domain 6 of 12, from 512 to 535: score 24.9, E = 0.00026 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC+ +Cg +F k++L++Hl +H KIAA1703 512 YKCH-VCGVAFVMKKHLNTHLLGkH 535 PF00096.16.fs: domain 6 of 12, from 512 to 535: score 23.0, E = 0.00018 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC+ +Cg +F k++L++Hl +H KIAA1703 512 YKCH-VCGVAFVMKKHLNTHLLGkH 535 PF00096.16.fs: domain 7 of 12, from 545 to 567: score 27.2, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C++sF+ k L++H++ H KIAA1703 545 FTCH-LCDRSFTEKWALNNHMKLH 567 PF00096.16.ls: domain 7 of 12, from 545 to 567: score 29.2, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C++sF+ k L++H++ H KIAA1703 545 FTCH-LCDRSFTEKWALNNHMKLH 567 PF00096.16.ls: domain 8 of 12, from 573 to 597: score 25.4, E = 0.00019 *->ykCpf.dCgksFsrksnLkrHlrtH<-* +kC+++ C++sF + s +k H rtH KIAA1703 573 FKCTWpTCHYSFLTASAMKDHYRTH 597 PF00096.16.fs: domain 8 of 12, from 573 to 597: score 23.4, E = 0.00014 *->ykCpf.dCgksFsrksnLkrHlrtH<-* +kC+++ C++sF + s +k H rtH KIAA1703 573 FKCTWpTCHYSFLTASAMKDHYRTH 597 PF00096.16.fs: domain 10 of 12, from 631 to 653: score 24.8, E = 6.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+ + +++s+L+rH+r+H KIAA1703 631 FKCD-ECNFASTTQSHLTRHKRVH 653 PF00096.16.ls: domain 10 of 12, from 631 to 653: score 26.8, E = 7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+ + +++s+L+rH+r+H KIAA1703 631 FKCD-ECNFASTTQSHLTRHKRVH 653 PF00096.16.ls: domain 12 of 12, from 690 to 713: score 20.0, E = 0.008 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y Cp +C++ + + ++++Hl+ +H KIAA1703 690 YNCP-KCDYGTNVPVEFRNHLKEqH 713 //