# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj10588.fasta.huge -Q ../query/KIAA1693.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1693, 901 aa vs ./tmplib.25089 library 1986604 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.6596+/-0.00742; mu= -2.2758+/- 0.503 mean_var=239.8500+/-58.335, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.082814 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1245 ( 892 res) hg04073 ( 892) 3324 410.8 3.5e-115 KIAA0454 ( 2296 res) bf02274 (2296) 278 47.3 2.4e-05 >>KIAA1245 ( 892 res) hg04073 (892 aa) initn: 3320 init1: 3320 opt: 3324 Z-score: 2159.8 bits: 410.8 E(): 3.5e-115 Smith-Waterman score: 3324; 94.085% identity (97.597% similar) in 541 aa overlap (1-541:337-877) 10 20 30 KIAA16 FVTQLACFLANQQNKYKYEECKDLIKSMLR :::::: :::.::::::::::::::::::: KIAA12 AEMNILEINEKLRPQLAEKKQQFRSLKEKCFVTQLAGFLAKQQNKYKYEECKDLIKSMLR 310 320 330 340 350 360 40 50 60 70 80 90 KIAA16 NERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNQHLQALLT :: :::::::::::::::::::::::::::::::::::::::::::::::::.::::::: KIAA12 NELQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNEHLQALLT 370 380 390 400 410 420 100 110 120 130 140 150 KIAA16 PDKPDKSQGQDLQEQLAEGCRLAQQLFQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQ ::.:::::::::::::::::::::.: ::::::::::::::::::: :::::::.:::.: KIAA12 PDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEDEKVLESSSPREMQ 430 440 450 460 470 480 160 170 180 190 200 210 KIAA16 KAEESKVPEDSLEECAITCSNSHSPCDSNQPHKNINITFEEDKVNSTLVVDRESSHDECQ :::::::::::::::::::::::.:::::::::::.::::::::::.::::::::::::: KIAA12 KAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDKVNSSLVVDRESSHDECQ 490 500 510 520 530 540 220 230 240 250 260 270 KIAA16 DAVNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLHPQLAEKKQQFRNLKEK ::.::::::::::::::::::::::::::::::::::::::::.:::::::::::.:::: KIAA12 DALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRSLKEK 550 560 570 580 590 600 280 290 300 310 320 330 KIAA16 CFVTQLACFLANQQNKYKNEECKDLIKSMLRNERQFKEEKLAEQLKQAEELRQYKVLVHS :::::.:::::.:::::: :::::::::::::: :::::::::::::::::::::::::: KIAA12 CFVTQVACFLAKQQNKYKYEECKDLIKSMLRNELQFKEEKLAEQLKQAEELRQYKVLVHS 610 620 630 640 650 660 340 350 360 370 380 390 KIAA16 QERELTQLREKLREGRDASCSLNQHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQK ::::::::::::::::::: :::.:::::::::::::::::::::::::::::::::::: KIAA12 QERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQK 670 680 690 700 710 720 400 410 420 430 440 450 KIAA16 LSPENDNDDDEDVQVEVAEKVQKSSAPREMPKAEEKEVPEDSLEECAITCSNSHGPYDSN :::::::::::::::::::::::::.:::: ::::::::::::::::::::::::::::: KIAA12 LSPENDNDDDEDVQVEVAEKVQKSSSPREMQKAEEKEVPEDSLEECAITCSNSHGPYDSN 730 740 750 760 770 780 460 470 480 490 500 510 KIAA16 QPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA12 QPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESE 790 800 810 820 830 840 520 530 540 550 560 570 KIAA16 EEEVPQESWDEGYSTLSIPPEMLASYQSYSGTFHSLEEQQVCMAVDIGGHRWDQVKKEDQ ::::::::::::::::::::: . .: .: KIAA12 EEEVPQESWDEGYSTLSIPPERTSVGSSEKGGPRGNRSQAQQGAAG 850 860 870 880 890 580 590 600 610 620 630 KIAA16 EATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYILEQQRVGWAL >>KIAA0454 ( 2296 res) bf02274 (2296 aa) initn: 353 init1: 136 opt: 278 Z-score: 187.7 bits: 47.3 E(): 2.4e-05 Smith-Waterman score: 278; 28.689% identity (59.016% similar) in 244 aa overlap (19-250:1448-1684) 10 20 30 40 KIAA16 FVTQLACFLANQQNKYKYEECKDLIKSMLRNERQFK----EEKLAEQL .. ..::. . . : :. ::::::.: KIAA04 GSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLPKNGLEEKLAEEL 1420 1430 1440 1450 1460 1470 50 60 70 80 90 KIAA16 KQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLNQH-------LQALLTPDKPDKS ..: .: :...: :::. ::.:.:::: ...: .. :: . : KIAA04 RSASWPGKYDSLIQDQARELSYLRQKIREGRGICYLITRHAKDTVKSFEDLLRSNDIDYY 1480 1490 1500 1510 1520 1530 100 110 120 130 140 150 KIAA16 QGQDLQEQLAEGCRLAQQLFQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEES-K ::...::::.: .:...: .::: .. ..: ... .: : ::.:. :. . KIAA04 LGQSFREQLAQGSQLTERLTSKLSTKDHKSEKDQAGLEP----LALRLSRELQEKEKVIE 1540 1550 1560 1570 1580 1590 160 170 180 190 200 210 KIAA16 VPEDSLEECAITCSNSHSPCDSNQPHKNINITFEEDKVNSTLVVDRESSHDECQDAVNIL : . .:. ..: :.::. ::.. .. .. .: .. : . . : .: : . : KIAA04 VLQAKLDARSLTPSSSHALSDSHRSPSSTSFLSDELEACSDMDIVSEYTHYEEKKAS--- 1600 1610 1620 1630 1640 1650 220 230 240 250 260 270 KIAA16 PVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLHPQLAEKKQQFRNLKEKCFVTQL : . . .. : :.:. : :. .. : : KIAA04 PSHSDSIHHSSHSAVLSSKPSSTSASQGAKAESNSNPISLPTPQNTPKEANQAHSGASTV 1660 1670 1680 1690 1700 1710 280 290 300 310 320 330 KIAA16 ACFLANQQNKYKNEECKDLIKSMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELT KIAA04 PPASTATLLSNDLEADSSYYLNSAQPHSPPRGTIELGRILEPGYLGSSGKWDVMRPQKGS 1720 1730 1740 1750 1760 1770 901 residues in 1 query sequences 1986604 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:13:12 2008 done: Thu Dec 18 15:13:13 2008 Total Scan time: 0.640 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]