hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09535834/chunk_1/iprscan-20080502-09535834.nocrc
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Query sequence: KIAA1688
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00324                                                 109.2    4.8e-28   1
SM00139                                                  76.4    3.5e-18   1
SM00456                                                  37.7    1.6e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/2      36    69 ..     1    34 []    11.8      3.5
SM00456    2/2      75   108 ..     1    34 []    25.9   0.0054
SM00139    1/1     733   875 ..     1   166 []    76.4  3.5e-18
SM00324    1/1     917  1090 ..     1   193 []   109.2  4.8e-28

Alignments of top-scoring domains:
SM00456: domain 1 of 2, from 36 to 69: score 11.8, E = 3.5
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                           W+e++ p +    Y N +T+e  W++P++   
    KIAA1688    36    NTRLEWVEIIEPRTRERMYANLVTGECVWDPPAG    69   

SM00456: domain 2 of 2, from 75 to 108: score 25.9, E = 0.0054
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      ++   W e +dp++ r YYyN+ T++t W +P++   
    KIAA1688    75    TSENQWWELFDPNTSRFYYYNASTQRTVWHRPQG    108  

SM00139: domain 1 of 1, from 733 to 875: score 76.4, E = 3.5e-18
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                      +s + ik++ +  +d      keA+++Fk+I+++MGD+  +      
    KIAA1688   733    WSSESIKKPMIVTSDR--HVKKEACELFKLIQMYMGDRRAKA----- 772  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                     ++l+++  + +kg +   LRDE+Y Ql++Q+t
    KIAA1688   773 ------------------DPLHVALEVATKGWSVQGLRDELYIQLCRQTT 804  

                   k........RGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql
                   ++ + ++  RGWeL+++c++ FpP+  +++ yL+ ++ r+ d+   t + 
    KIAA1688   805 EnfrleslaRGWELMAICLAFFPPTP-KFHSYLEGYIYRHMDPVNDTKGV 853  

                   maqglakycleGaRkqpPsrlEleAik<-*
                   +   +akyc+++  k       l+  k   
    KIAA1688   854 AISTYAKYCYHKLQKAA-----LTGAK    875  

SM00324: domain 1 of 1, from 917 to 1090: score 109.2, E = 4.8e-28
                   *->spiPiivekCieylek.rGldteGIYRvsGsksrvkeLreafdsged
                      +++P +  ++ e++ + +G +teGI+Rv+G   +v++L+ + d++++
    KIAA1688   917    RQLPWVQTRLSEEVLAlNGDQTEGIFRVPGDIDEVNALKLQVDQWKV 963  

                   .dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefi
                   ++               + +d+h+ A+lLKl+ ReL ePL+++e ye++i
    KIAA1688   964 pT---------------GLEDPHVPASLLKLWYRELEEPLIPHEFYEQCI 998  

                   eaaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.H
                     + +                     +a   +++ LP+ nr +L yL+++
    KIAA1688   999 AHYDS--------------------PEAAVAVVHALPRINRMVLCYLIrF 1028 

                   LnrVa..ehsevNkMtarNLAivFgPtLlrpp...........ltdikhq
                   L+ + ++++ +v+kM+++NLA+v +P+ lr+++++++   +++ +++++ 
    KIAA1688  1029 LQVFVqpANVAVTKMDVSNLAMVMAPNCLRCQsddprvifentRKEMSFL 1078 

                   nkvvetlienad<-*
                    +++++l +  +   
    KIAA1688  1079 RVLIQHLDTSFM    1090 

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