hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09535834/chunk_1/iprscan-20080502-09535834.nocrc
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Query sequence: KIAA1688
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  170.6    4.7e-50   1
PF00620.17.ls RhoGAP domain                                  172.5    9.7e-49   1
PF00784.8.fs MyTH4 domain                                    75.1    7.2e-21   1
PF00784.8.ls MyTH4 domain                                    77.0    5.5e-20   1
PF00397.16.fs WW domain                                       28.2    6.4e-07   2
PF00397.16.ls WW domain                                       27.3    5.1e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00397.16.ls   1/2      37    67 ..     1    30 []     4.2      0.7
PF00397.16.ls   2/2      76   106 ..     1    30 []    23.1  0.00095
PF00397.16.fs   2/2      76   106 ..     1    30 []    21.1  6.4e-05
PF00784.8.fs   1/1     772   890 ..     1   122 []    75.1  7.2e-21
PF00784.8.ls   1/1     772   890 ..     1   122 []    77.0  5.5e-20
PF00620.17.ls   1/1     920  1066 ..     1   155 []   172.5  9.7e-49
PF00620.17.fs   1/1     920  1066 ..     1   155 []   170.6  4.7e-50

Alignments of top-scoring domains:
PF00397.16.ls: domain 1 of 2, from 37 to 67: score 4.2, E = 0.7
                   *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-*
                          W+e++ +      Y N +T++  W++P   
    KIAA1688    37    TRLEWVEIIEpRTRERMYANLVTGECVWDPP    67   

PF00397.16.ls: domain 2 of 2, from 76 to 106: score 23.1, E = 0.00095
                   *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-*
                      ++  W e +d+   r YYyN  T++T W +P   
    KIAA1688    76    SENQWWELFDpNTSRFYYYNASTQRTVWHRP    106  

PF00397.16.fs: domain 2 of 2, from 76 to 106: score 21.1, E = 6.4e-05
                   *->lppgWeertd.pdGrpYYyNhnTktTqWekP<-*
                      ++  W e +d+   r YYyN  T++T W +P   
    KIAA1688    76    SENQWWELFDpNTSRFYYYNASTQRTVWHRP    106  

PF00784.8.fs: domain 1 of 1, from 772 to 890: score 75.1, E = 7.2e-21
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                       ++++++  +  +g +   LRDE+Y Q+++Q+t+N     +S++rGW
    KIAA1688   772    ADPLHVALEVATKGWSVQGLRDELYIQLCRQTTENFR--LESLARGW 816  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgp...elegyaadcqe
                   eL+ +c++ FpP+ ++  yL+ +++ r  + +  ++++ +   ya++c+ 
    KIAA1688   817 ELMAICLAFFPPTPKFHSYLE-GYIYRHMD-PVNDTkgvAISTYAKYCYH 864  

                   rLkiYktqknGYqsRkyp..PsrlEieAik<-*
                   +L+  k++  G  + k +++P+++Ei  +k   
    KIAA1688   865 KLQ--KAALTG--AKKGLkkPNVEEIRHAK    890  

PF00784.8.ls: domain 1 of 1, from 772 to 890: score 77.0, E = 5.5e-20
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                       ++++++  +  +g +   LRDE+Y Q+++Q+t+N     +S++rGW
    KIAA1688   772    ADPLHVALEVATKGWSVQGLRDELYIQLCRQTTENFR--LESLARGW 816  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgp...elegyaadcqe
                   eL+ +c++ FpP+ ++  yL+ +++ r  + +  ++++ +   ya++c+ 
    KIAA1688   817 ELMAICLAFFPPTPKFHSYLE-GYIYRHMD-PVNDTkgvAISTYAKYCYH 864  

                   rLkiYktqknGYqsRkyp..PsrlEieAik<-*
                   +L+  k++  G  + k +++P+++Ei  +k   
    KIAA1688   865 KLQ--KAALTG--AKKGLkkPNVEEIRHAK    890  

PF00620.17.ls: domain 1 of 1, from 920 to 1066: score 172.5, E = 9.7e-49
                   *->PlivekCieflek.rGLdtEGIyRvsGsksrikeLreafdrgedvdl
                      P++  ++ e++ + +G +tEGI+Rv+G++ ++++L+ + d++++   
    KIAA1688   920    PWVQTRLSEEVLAlNGDQTEGIFRVPGDIDEVNALKLQVDQWKV--- 963  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                    +++ ed+hv AslLKl+ ReL ePL+++e+ye +i+  ++s       e
    KIAA1688   964 -PTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIA-HYDS------PE 1005 

                   alrellrkLPpaNrdtLryLlahLnrVaq..nsevNkMtahNLAivFgPt
                   a  ++++ LP+ Nr +L+yL+++L+ + q+ n +v+kM+++NLA+v++P+
    KIAA1688  1006 AAVAVVHALPRINRMVLCYLIRFLQVFVQpaNVAVTKMDVSNLAMVMAPN 1055 

                   Llrppdgdsad<-*
                   +lr++++d++    
    KIAA1688  1056 CLRCQSDDPRV    1066 

PF00620.17.fs: domain 1 of 1, from 920 to 1066: score 170.6, E = 4.7e-50
                   *->PlivekCieflek.rGLdtEGIyRvsGsksrikeLreafdrgedvdl
                      P++  ++ e++ + +G +tEGI+Rv+G++ ++++L+ + d++++   
    KIAA1688   920    PWVQTRLSEEVLAlNGDQTEGIFRVPGDIDEVNALKLQVDQWKV--- 963  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                    +++ ed+hv AslLKl+ ReL ePL+++e+ye +i+  ++s       e
    KIAA1688   964 -PTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIA-HYDS------PE 1005 

                   alrellrkLPpaNrdtLryLlahLnrVaq..nsevNkMtahNLAivFgPt
                   a  ++++ LP+ Nr +L+yL+++L+ + q+ n +v+kM+++NLA+v++P+
    KIAA1688  1006 AAVAVVHALPRINRMVLCYLIRFLQVFVQpaNVAVTKMDVSNLAMVMAPN 1055 

                   Llrppdgdsad<-*
                   +lr++++d++    
    KIAA1688  1056 CLRCQSDDPRV    1066 

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