# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh26207.fasta.huge -Q ../query/KIAA1688.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1688, 1094 aa
 vs ./tmplib.25089 library

1986411 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.6823+/-0.00986; mu= -10.6449+/- 0.662
 mean_var=450.0688+/-109.988, 0's: 0 Z-trim: 11  B-trim: 0 in 0/40
 Lambda= 0.060455

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0053  ( 666 res)   ha01417                     ( 666)  300 41.3 0.00053


>>KIAA0053  ( 666 res)   ha01417                          (666 aa)
 initn: 219 init1:  94 opt: 300  Z-score: 163.7  bits: 41.3 E(): 0.00053
Smith-Waterman score: 300;  31.336% identity (63.134% similar) in 217 aa overlap (884-1089:162-374)

           860       870       880       890        900       910  
KIAA16 AISTYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSP-SMFGSALQEVMGMQRE
                                     : ..  . .. .: ..::. :.:..... .
KIAA00 VFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGVFGQRLDETVAYE-Q
             140       150       160       170       180        190

            920       930       940       950       960       970  
KIAA16 RYPERQLPWVQTRLSEEVLALNGDQTEGIFRVPGDIDEVNALKLQVDQWKVPTGLEDP--
       ..  . .: .  . .: .:  .: . :::::.::. . :. :.   :  . :.  .:   
KIAA00 KFGPHLVPILVEKCAEFILE-HGRNEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDV
              200       210        220       230       240         

              980       990           1000      1010         1020  
KIAA16 HVPASLLKLWYRELEEPLIPHEFYEQ---C--IAHYDSPEAAVAVVHAL---PRINRMVL
       :. ::::::. :.: ::..:   ::    :  ... :  .:   ... :   :: :  .:
KIAA00 HTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELMKQLSILPRDNYSLL
     250       260       270       280       290       300         

           1030      1040      1050      1060      1070      1080  
KIAA16 CYLIRFLQVFVQPANVAVTKMDVSNLAMVMAPNCLRCQSDDPRVIFENTRKEMSFLRVLI
        :. :::.  .:  : ::.::.:.::: :.. : .: . .:: ::...: . .  . ..:
KIAA00 SYICRFLHE-IQ-LNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMI
     310        320        330       340       350       360       

           1090                                                    
KIAA16 QHLDTSFMEGVL                                                
       .  .. :                                                     
KIAA00 RDHEVLFPKSKDIPLSPPAQKNDPKKAPVARSSVGWDATEDLRISRTDSFSSMTSDSDTT
       370       380       390       400       410       420       




1094 residues in 1 query   sequences
1986411 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:13:01 2008 done: Thu Dec 18 15:13:02 2008
 Total Scan time:  0.720 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]