# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh23414.fasta.huge -Q ../query/KIAA1680.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1680, 902 aa
 vs ./tmplib.25089 library

1986603 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.2428+/-0.00671; mu= 5.5711+/- 0.454
 mean_var=174.5855+/-42.211, 0's: 0 Z-trim: 1  B-trim: 52 in 1/39
 Lambda= 0.097067

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1128  ( 588 res)   hg03213                     ( 588)  185 38.5  0.0028


>>KIAA1128  ( 588 res)   hg03213                          (588 aa)
 initn: 306 init1: 146 opt: 185  Z-score: 150.8  bits: 38.5 E(): 0.0028
Smith-Waterman score: 338;  26.096% identity (55.950% similar) in 479 aa overlap (328-781:122-585)

       300       310       320       330       340       350       
KIAA16 MSLNSAAVTKTTTELTGTVPCAIMSPGKYRLEGQCSTESNSLPETSAANQKEVLLQIAEL
                                     .:..    .:.      :... .  .. ..
KIAA11 GNKNSPADTCVEEDATVLAKDRAANKDQELIENESYRTKNNQTMKHDAKMRYLSDDVDDI
             100       110       120       130       140       150 

       360       370       380       390       400        410      
KIAA16 PATSVSHSESNLPADSEREENIGLQNGETMLGTNSPRKLGFYEQ-HKAIAEHVKGIHPIS
         .:.: :..:  ...  .. : .....    :  :..... :. :.    .     :  
KIAA11 SLSSLSSSDKNDLSEDFSDDFIDIEDSNRTRIT--PEEMSLKEEKHENGPPQDMFDSPKE
             160       170       180         190       200         

        420       430       440       450          460       470   
KIAA16 DSKIIPTSGDHHIFNKTSHGYEANPAKVLASSLSP---FREGRFIERRLRSSSEGTAGSS
       . : . .. :. :  ..:   : .      . .::   .: :  .:    .::.::   .
KIAA11 NEKAF-SKTDEWIDISVSDRSECTKHTSGNNLVSPDTDYRAGSSFELSPSDSSDGTYMWD
     210        220       230       240       250       260        

           480       490       500       510       520       530   
KIAA16 RMILKPKDGNIEEVNSLRKQRAGSSSSKMNSLDVLNNLGSCELDEDDLMLDLEFLEEQSL
       .  :.:  ::.. :.: .       ::.:::.:.:::: ::.:..::::::... :.  :
KIAA11 EEGLEPI-GNVHPVGSYE-------SSEMNSIDILNNLESCDLEDDDLMLDVDLPEDAPL
      270        280              290       300       310       320

           540       550            560       570       580        
KIAA16 HPSVCREDSYHSVVSCAAVVLTPME-----PMIEMKKREEPEFPEPSKQNLSLK--LTKD
       .   :  :...        :  :.:     :  . . .:. .. .:.. .   :  :.. 
KIAA11 ENVEC--DNMNRFDRPDRNVRQPQEGFWKRPPQRWSGQEHYHLSHPDHYHHHGKSDLSRG
                330       340       350       360       370        

         590       600         610        620       630       640  
KIAA16 VD-QEARCSHISRMPNSP--SADWPLQGVEENGGI-DSLPFRLMLQDCTAVKTLLLKMKR
          .:.  .:.  . . :  .:.  .  : ::  : : . .: :.:::::::: :::.::
KIAA11 SPYRESPLGHFESYGGMPFFQAQKMFVDVPENTVILDEMTLRHMVQDCTAVKTQLLKLKR
      380       390       400       410       420       430        

             650       660         670       680       690         
KIAA16 VL-QESADMSPASSTTSLPVSPLTEE--PVPFKDIMKDECSMLKLQLKEKDELISQLQEE
       .: :.... :  .   ::: ::  :.   :  .. . .: ..:: ..:.::: :. :. .
KIAA11 LLHQHDGSGSLHDIQLSLPSSPEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQ
      440       450       460       470       480       490        

     700         710          720        730       740       750   
KIAA16 LGKVRHL--QKAFASR---VDKSTQTELLCYDG-LNLKRLETVQGGREATYRNRIVSQNL
       :. ..:.  ::    .   .:: :::      :  .   .   ::. ..  :. .  .  
KIAA11 LA-TQHICHQKCKEEKCTYADKYTQTPWRRIPGGYSAPSFSPWQGSFQGIPRT-VPPHRR
      500        510       520       530       540       550       

           760        770       780       790       800       810  
KIAA16 STRDRKAIHTPTED-RFRYSAADQTSPYKNKTCQLPSLCLSNFLKDKELAEVIKHSRGTY
       .: .  :.. :..  : . . ..... :.                               
KIAA11 QTSSTTAFQQPSQTHRSHPGKTNKATTYRGPQ                            
        560       570       580                                    




902 residues in 1 query   sequences
1986603 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:41 2008 done: Thu Dec 18 15:12:42 2008
 Total Scan time:  0.630 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]