hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09370411/chunk_1/iprscan-20080502-09370411.nocrc
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Query sequence: KIAA1678
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF05716.3.fs A-kinase anchor protein 110 kDa (AKAP 110)      18.3    1.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF05716.3.fs   1/1    1226  1301 ..   892   977 .]    18.3  1.3e-05

Alignments of top-scoring domains:
PF05716.3.fs: domain 1 of 1, from 1226 to 1301: score 18.3, E = 1.3e-05
                   *->lqAvlqwvAAselNrvPilyfagddegiqekLlqlSAkAveKGySVG
                      l A lqw+AAsel  +P  yf    e   ek l++      K   VG
    KIAA1678  1226    LRATLQWIAASELG-IPTIYFKKSQENRIEKFLDVVQLVHRKSWKVG 1271 

                   evLQsVlryeKERQlDEaverwpGNvtrlQLLDWlmvnL<-*
                   ++   V +y K   + E          rl L DWl+  L   
    KIAA1678  1272 DIFHAVVQYCK---MHEEQ-----KDGRLSLFDWLL-EL    1301 

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