hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09301685/chunk_1/iprscan-20080502-09301685.nocrc
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Query sequence: KIAA1674
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             40.8    4.3e-09   4
PF00560.23.fs Leucine Rich Repeat                             33.4    4.4e-08   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   1/4      76    98 ..     1    24 []    11.3        2
PF00560.23.fs   2/4     100   121 ..     1    24 []    12.3    0.026
PF00560.23.ls   2/4     100   121 ..     1    24 []    14.1     0.46
PF00560.23.ls   3/4     123   144 ..     1    24 []     9.3      4.9

Alignments of top-scoring domains:
PF00560.23.ls: domain 1 of 4, from 76 to 98: score 11.3, E = 2
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L+ L+L++ N  l   +p + ++ l   
    KIAA1674    76    SLQQLHLQR-N-ALC-VIPQDfFqLL    98   

PF00560.23.fs: domain 2 of 4, from 100 to 121: score 12.3, E = 0.026
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++LdL++ N ++ + lps+++     
    KIAA1674   100    NLTWLDLRY-N-RI-KALPSGIgAH    121  

PF00560.23.ls: domain 2 of 4, from 100 to 121: score 14.1, E = 0.46
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      nL++LdL++ N ++ + lps+++     
    KIAA1674   100    NLTWLDLRY-N-RI-KALPSGIgAH    121  

PF00560.23.ls: domain 3 of 4, from 123 to 144: score 9.3, E = 4.9
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L++L L++ N ++ + lp++l++    
    KIAA1674   123    HLKTLLLER-N-PI-KMLPVELgSV    144  

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