# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fg00690.fasta.huge -Q ../query/KIAA1673.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1673, 712 aa vs ./tmplib.25089 library 1986793 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.9000+/-0.00876; mu= -2.3994+/- 0.594 mean_var=302.5520+/-72.112, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.073735 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0940 ( 699 res) hh04894 ( 699) 1981 224.5 2.6e-59 >>KIAA0940 ( 699 res) hh04894 (699 aa) initn: 2367 init1: 1847 opt: 1981 Z-score: 1156.8 bits: 224.5 E(): 2.6e-59 Smith-Waterman score: 2604; 60.056% identity (74.402% similar) in 711 aa overlap (60-712:8-699) 30 40 50 60 70 80 KIAA16 PPHHHQNATPSPAAFINNNTAANGSSAGSAWLFPAPATHNIQDEILGSEKAKSQQQEQQD : . : : .::..: .:.:.: : ::. KIAA09 ILSILKNWTLKAAQT--MQDDLL-MDKSKTQPQPQQQ 10 20 30 90 100 110 120 130 140 KIAA16 PLEKQQLSP-SPGQEAGILP-ETEKAKSEENQG------DNSSENGNGKEKIRIESPVLT ..:: .: : .:: : .: : :::.. . :: .:...:::.: KIAA09 QRQQQQPQPESSVSEAPSTPLSSETPKPEENSAVPALSPAAAPPAPNGPDKMQMESPLLP 40 50 60 70 80 90 150 160 170 180 190 KIAA16 GFDYQEATGLGTSTQ-PLTSSASSLTGF-SNWSAAIAPSSSTIINEDASFFHQGGVPAAS :..... : : . .:: .: :.:: ...: :: ::: :: .:. KIAA09 GLSFHQPPQQPPPPQEPAAPGASLSPSFGSTWS-----TGTTNAVED-SFF-QGITPV-- 100 110 120 130 140 200 210 220 230 240 KIAA16 ANNGALLFQNFPHHVSPGFGGSFSPQIG-PLSQHHPHHPH----------FQHHHSQHQQ ::..:::::::::.: :::.:::::: .::: . : : ..: : KIAA09 --NGTMLFQNFPHHVNPVFGGTFSPQIGLAQTQHHQQPPPPAPAPQPAQPAQPPQAQPPQ 150 160 170 180 190 200 250 260 270 280 290 300 KIAA16 QRRSPASPHPPPFTHRNAAFNQLPHLANNLNKPPSP----WSSYQSPSPTPSSSWSPG-- :::::::: :...:.:: : .:: : .. . . . ::::. KIAA09 QRRSPASPSQAPYAQRSAA-AAYGHQPIMTSKPSSSSAVAAAAAAAAASSASSSWNTHQS 210 220 230 240 250 260 310 320 330 340 KIAA16 -----GGGYGGWGGSQ-GRDHRRGLNGGI-------TPLNSISPLKKNFASNHIQLQKYA .. . ::: : ::: ::... :. .::: :::::: :.:: : :. KIAA09 VNAAWSAPSNPWGGLQAGRDPRRAVGVGVGVGVGVPSPLNPISPLKKPFSSNVIAPPKFP 270 280 290 300 310 320 350 360 370 380 390 400 KIAA16 RPSSAFAPKSWMEDSLNRADN---IFPFPDRPR---TFDMHSLESSLIDIMRAENDTIKA : .. .. ::::::. :.:: ..:: :: : ::..::::.::.:..:.... .:. KIAA09 R-AAPLTSKSWMEDNAFRTDNGNNLLPFQDRSRPYDTFNLHSLENSLMDMIRTDHEPLKG 330 340 350 360 370 380 410 420 430 440 450 KIAA16 RTY------GRRR-----GQSSLFPMEDGFLDDGRGDQPLHSGLGSP-HCFSHQNGERVE : : ..:::::.::.::::..::: : :::.:: .: ::::::: KIAA09 RMGINFHHPGTDNIMALNSRSSLFPFEDAFLDDSHGDQALSSGLSSPTRC---QNGERVE 390 400 410 420 430 460 470 480 490 500 510 KIAA16 RYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESSV ::::::::::::::::::::::::::::::.::::::::::::::::::::::::.:::: KIAA09 RYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSV 440 450 460 470 480 490 520 530 540 550 560 570 KIAA16 QALIDACIEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVP :::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA09 QALIDACLEEDGKLYLCVSSPTIKDKPVQIRPWNLSDSDFVMDGSQPLDPRKTIFVGGVP 500 510 520 530 540 550 580 590 600 610 620 630 KIAA16 RPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA09 RPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQH 560 570 580 590 600 610 640 650 660 670 680 690 KIAA16 GEIDKRVEVKPYVLDDQLCDECQGARCGGKFAPFFCANVTCLQYYCEYCWAAIHSRAGRE ..:::::::::::::::.::::::.::::::::::::::::::::::::::.:::::::: KIAA09 NDIDKRVEVKPYVLDDQMCDECQGTRCGGKFAPFFCANVTCLQYYCEYCWASIHSRAGRE 620 630 640 650 660 670 700 710 KIAA16 FHKPLVKEGGDRPRHISFRWN :::::::::::::::. :::. KIAA09 FHKPLVKEGGDRPRHVPFRWS 680 690 712 residues in 1 query sequences 1986793 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:12:25 2008 done: Thu Dec 18 15:12:26 2008 Total Scan time: 0.550 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]