# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02164.fasta.huge -Q ../query/KIAA1671.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1671, 364 aa
 vs ./tmplib.25089 library

1987141 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.5995+/-0.00777; mu= -8.6956+/- 0.527
 mean_var=260.9083+/-62.255, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.079402

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1741  ( 1777 res)   fh23254                    (1777)  300 47.3 7.8e-06


>>KIAA1741  ( 1777 res)   fh23254                         (1777 aa)
 initn: 278 init1: 106 opt: 300  Z-score: 196.6  bits: 47.3 E(): 7.8e-06
Smith-Waterman score: 300;  28.239% identity (56.146% similar) in 301 aa overlap (73-357:1490-1776)

             50        60        70        80        90            
KIAA16 SPHNLWVLEMEYYYCPSLLKLLRYLWDQLKQCFSRQPTEPKDTDTLVHE----AGSQYGT
                                     .: .: :  :. .. :..:    ..:.  .
KIAA17 EDYSSSSLEPHPADPGMETGEALSFGASPGRCPARPP--PSGSQGLLEEMLAASSSKAVA
    1460      1470      1480      1490        1500      1510       

      100         110       120       130       140        150     
KIAA16 WTEQCQSGES--LATESPDSSATSTRKQPPSSRLSSLSSQTEPTSAGDQY-DCSRDQRST
         :.  :: .  :  :.  ..:.. .   :. : :  : . .: . ..:  : .    :.
KIAA17 RRESAASGLGGLLEEEGAGAGAAQEEVLEPG-RDSPPSWRPQPDGEASQTEDVDGTWGSS
      1520      1530      1540       1550      1560      1570      

         160       170       180       190       200       210     
KIAA16 SVDHSSTDLESTDGMEGPPPPDACPEKRVDDFSFIDQTSVLDSSALKTRVQLSKRSRRRA
       ..  :.    .:.   .  ::   : .   :::::..: .:::.  ..:..:...  .::
KIAA17 AARWSDQGPAQTSRRPSQGPPARSPSQ---DFSFIEDTEILDSAMYRSRANLGRKRGHRA
       1580      1590      1600         1610      1620      1630   

         220       230       240       250       260          270  
KIAA16 PISHSLRRSRFSESESRSPLEDETDNTWMFKDSTEEKSPRKEESDEE---ETASKAERTP
       :. .      .::. .        ... .:.:::: .. :   ::::   :  :.  :  
KIAA17 PVIRPGGTLGLSEAAD--------SDAHLFQDSTEPRASRVPSSDEEVVEEPQSRRTRMS
          1640              1650      1660      1670      1680     

             280       290       300        310           320      
KIAA16 V-SHPQRMPAFPGMDPAVLKAQLHKRPEVDSPGE-TPSWAPQPKSP----KSPFQPGVLG
       . ..  ..  :::..:..:::.:. : .    :: . : . : .:     ::   ::.  
KIAA17 LGTKGLKVNLFPGLSPSALKAKLRPRNRSAEEGELAESKSSQKESAVQRSKSCKVPGLGK
        1690      1700      1710      1720      1730      1740     

        330       340       350       360    
KIAA16 SRVLPSSMDKDERSDEPSPQWLKELKSKKRQSLYENQV
         .:: . .:.  :.  ::.::. :: ::..       
KIAA17 PLTLPPKPEKSSGSEGSSPNWLQALKLKKKKV      
        1750      1760      1770             




364 residues in 1 query   sequences
1987141 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:21 2008 done: Thu Dec 18 15:12:22 2008
 Total Scan time:  0.380 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]