hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09202554/chunk_1/iprscan-20080502-09202554.nocrc
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Query sequence: KIAA1668
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00307.21.fs Calponin homology (CH) domain                   31.7    7.3e-08   1
PF00412.12.fs LIM domain                                      24.5    1.8e-06   1
PF00412.12.ls LIM domain                                      20.4    2.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00307.21.fs   1/1       2    36 ..    86   122 .]    31.7  7.3e-08
PF00412.12.fs   1/1      92   132 ..     1    44 [.    24.5  1.8e-06
PF00412.12.ls   1/1      92   150 ..     1    61 []    20.4  2.1e-05

Alignments of top-scoring domains:
PF00307.21.fs: domain 1 of 1, from 2 to 36: score 31.7, E = 7.3e-08
                   *->lgiilvlidpeDivegnpdPDeklvltllwqLirrfq<-*
                      lgi + l+dp+D+v++   PD+++++t+++q++++f    
    KIAA1668     2    LGI-PALLDPNDMVSMSV-PDCLSIMTYVSQYYNHFC    36   

PF00412.12.fs: domain 1 of 1, from 92 to 132: score 24.5, E = 1.8e-06
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffe<-*
                      Ca+C++ ++  ++   A ++++H++CFrC  C+ +L +g   +e   
    KIAA1668    92    CAACQQHVHLVQRYL-ADGRLYHRHCFRCRRCSSTLLPG--AYE    132  

PF00412.12.ls: domain 1 of 1, from 92 to 150: score 20.4, E = 2.1e-05
                   *->CagCgkpIydrelvrrAldkvwHpeCFrCavCgkpLgegdeffek..
                      Ca+C++ ++  ++   A ++++H++CFrC  C+ +L +g   +e ++
    KIAA1668    92    CAACQQHVHLVQRYL-ADGRLYHRHCFRCRRCSSTLLPG--AYENgp 135  

                   .dgsklYCkhDyyklfg<-*
                   ++g  ++C   ++++ g   
    KIAA1668   136 eEG-TFVCAE-HCARLG    150  

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