# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh11717.fasta.huge -Q ../query/KIAA1668.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1668, 791 aa
 vs ./tmplib.25089 library

1986714 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 16.0455+/-0.0114; mu= -36.2059+/- 0.767
 mean_var=773.7186+/-182.866, 0's: 0 Z-trim: 16  B-trim: 0 in 0/40
 Lambda= 0.046109

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0819  ( 989 res)   hh01037                     ( 989)  402 42.2 0.00032


>>KIAA0819  ( 989 res)   hh01037                          (989 aa)
 initn: 454 init1: 266 opt: 402  Z-score: 167.8  bits: 42.2 E(): 0.00032
Smith-Waterman score: 499;  27.451% identity (50.377% similar) in 663 aa overlap (182-753:335-984)

             160       170       180       190       200           
KIAA16 GTRSGTRPGPFSQPKQQHQQQLAEDAKDVPGGGPSSSAPAGAEADGPKASPEARPQIP--
                                     :  ::  .::   ..  . : :  ::    
KIAA08 LRRSDLVEEFWMKSAEIRRSLGLTPVDRSKGPEPSFPTPAFRPVSLKSYSVEKSPQDEGL
          310       320       330       340       350       360    

       210        220       230         240        250             
KIAA16 --TKP-RVPGKLQELASPPAGRPT--PAPRKASESTT-PAPPTPRPRSSLQQENL-----
          ::  .: .:      : :.:   :.::. :.     :    :  :: .  .:     
KIAA08 HLLKPLSIPKRLG--LPKPEGEPLSLPTPRSPSDRELRSAQEERRELSSSSGLGLHGSSS
          370         380       390       400       410       420  

       260       270       280       290       300         310     
KIAA16 -VEQAGSSSLVNGRLHELPVPKPRGTPKPSEGTPAPRKDPPWIT--LVQAEPKKK--PAP
        ..  ::.:. :     . .: : . : :    : : ..:  .   : .:::. .  : :
KIAA08 NMKTLGSQSF-NTSDSAMLTP-PSSPPPP----PPPGEEPATLRRKLREAEPNASVVPPP
            430        440            450       460       470      

             320       330       340       350       360           
KIAA16 LPPS--SSPGPPSQDSRQVENGGTEEVAQPSPTASLESKPYNPFEEEEEDKEE-------
       :: .    :  :.:  :.    .  : ..  : :.     :.   :.   .:.       
KIAA08 LPATWMRPPREPAQPPREEVRKSFVESVEEIPFADDVEDTYDDKTEDSSLQEKFFTPPSC
        480       490       500       510       520       530      

              370       380       390       400           410      
KIAA16 ----EAPAAPSLATSPALGHPESTPKSLHPWYGITPTSSPKTKK----RPAPRAPSASPL
           : :  : ::     :.  .   .:.:     :  : ..:.    :   :  :..  
KIAA08 WPRPEKPRHPPLAKEN--GRLPALEGTLQPQKRGLPLVSAEAKELAEERMRAREKSVKSQ
        540       550         560       570       580       590    

              420       430         440       450           460    
KIAA16 AL------HASRLSHSEPPSATPSP--ALSVESLSSESASQTAGAELL----EPPAVPKS
       ::      . ::... :  :..: :  : :. : ..:   ..     :    ::    ..
KIAA08 ALRDAMARQLSRMQQMELASGAPRPRKASSAPSQGKERRPDSPTRPTLRGSEEPTLKHEA
          600       610       620       630       640       650    

          470       480       490             500       510        
KIAA16 SSEPAVHAPGTPGNPVSLSTNSSLASSGE------LVEPRVEQMPQASPGLA-PRTRGSS
       .:: ..  :.  :.: . : .:: .:::.      :  :: ..  . : : . :  . ::
KIAA08 TSEEVLSPPSDSGGPDG-SFTSSEGSSGKSKKRSSLFSPRRNKKEKKSKGEGRPPEKPSS
          660       670        680       690       700       710   

          520              530       540                 550       
KIAA16 G---PQPAKP-------CSGATPTPLLLVGDRS-P-VPSPGSSS--------PQLQVKSS
       .      :::        ::        . :.: : .:: :..         : .... .
KIAA08 NLLEEAAAKPKSLWKSVFSGYKKDKKKKADDKSCPSTPSSGATVDSGKHRVLPVVRAELQ
           720       730       740       750       760       770   

       560        570       580       590          600         610 
KIAA16 CKEN-PFNRKPSPAASPATKKATKGSKPVRPPAPGHGFPL---IKRKVQ--ADQYIPEED
        ...  :..  . ... . .:... :.  : :       :   . :.::  : .   .:.
KIAA08 LRRQLSFSEDSDLSSDDVLEKSSQKSR--REPRTYTEEELNAKLTRRVQKAARRQAKQEE
           780       790       800         810       820       830 

                      620       630       640         650       660
KIAA16 ---------IHGEMDTIERRLDALEHRGVLLEEKLRGGLNEGREDD--MLVDWFKLIHEK
                :. ... .:.:   ::.::: .:. :::  . :..::  .. .::::..::
KIAA08 LKRLHRAQIIQRQLQQVEERQRRLEERGVAVEKALRGEAGMGKKDDPKLMQEWFKLVQEK
             840       850       860       870       880       890 

              670       680       690       700       710       720
KIAA16 HLLVRRESELIYVFKQQNLEQRQADVEYELRCLLNKPEKDWTEEDRAREKVLMQELVTLI
       . .:: ::::.   .. .::.::. .. :::  .   ..  :::. ..:: ...:.. ..
KIAA08 NAMVRYESELMIFARELELEDRQSRLQQELRERMAVEDHLKTEEELSEEKQILNEMLEVV
             900       910       920       930       940       950 

              730       740       750       760       770       780
KIAA16 EQRNAIINCLDEDRQREEEEDKMLEAMIKKKEFQREAEPEGKKKGKFKTMKMLKLLGNKR
       :::....  :.:.: ::.:::: ::: . .: :                           
KIAA08 EQRDSLVALLEEQRLREREEDKDLEAAMLSKGFSLNWS                      
             960       970       980                               

              790 
KIAA16 DAKSKSPRDKS




791 residues in 1 query   sequences
1986714 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:15 2008 done: Thu Dec 18 15:12:15 2008
 Total Scan time:  0.610 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]