hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09152678/chunk_1/iprscan-20080502-09152678.nocrc
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Query sequence: KIAA1665
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF08292.2.fs   RNA polymerase III subunit Rpc25         251.6    3.7e-74   1
PF08292.2.ls   RNA polymerase III subunit Rpc25         253.4    4.3e-73   1
PF03876.7.fs   RNA polymerase Rpb7-like, N-terminal d    95.4    9.2e-30   1
PF03876.7.ls   RNA polymerase Rpb7-like, N-terminal d    97.3    4.2e-26   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF03876.7.fs     1/1      21    90 ..     1    72 []    95.4  9.2e-30
PF03876.7.ls     1/1      21    90 ..     1    72 []    97.3  4.2e-26
PF08292.2.fs     1/1      92   214 ..     1   143 []   251.6  3.7e-74
PF08292.2.ls     1/1      92   214 ..     1   143 []   253.4  4.3e-73

Alignments of top-scoring domains:
PF03876.7.fs: domain 1 of 1, from 21 to 90: score 95.4, E = 9.2e-30
                   *->edtvrlpPsylgnnledaikehLnekyegkvdknvGvviavydikei
                       dtvr+pP ++++ l+d i+e+Ln+k+++kv+ nvG++i+  di  +
    KIAA1665    21    VDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKL 67   

                   egeGkilvpgdGfayfrVtFralvF<-*
                    +++++ +pgdG+++ +V+Fr++vF   
    KIAA1665    68 -EDAYV-FPGDGASHTKVHFRCVVF    90   

PF03876.7.ls: domain 1 of 1, from 21 to 90: score 97.3, E = 4.2e-26
                   *->edtvrlpPsylgnnledaikehLnekyegkvdknvGvviavydikei
                       dtvr+pP ++++ l+d i+e+Ln+k+++kv+ nvG++i+  di  +
    KIAA1665    21    VDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKL 67   

                   egeGkilvpgdGfayfrVtFralvF<-*
                    +++++ +pgdG+++ +V+Fr++vF   
    KIAA1665    68 -EDAYV-FPGDGASHTKVHFRCVVF    90   

PF08292.2.fs: domain 1 of 1, from 92 to 214: score 251.6, E = 3.7e-74
                   *->PFvGEVltGkIkgCSrEGihVslLgFFDDIfIPkemLfepsvFeeeE
                      PF++E+l GkIkgCS EG+hVs LgFFDDI+IP+e+L++p++F+e+E
    KIAA1665    92    PFLDEILIGKIKGCSPEGVHVS-LGFFDDILIPPESLQQPAKFDEAE 137  

                   qaWvWeydeEDGeepteLYlDvgEeIRFRVeeevFvDisPkspkeakele
                   q+WvWey++E+G+  ++LY+D+gEeIRFRV +e FvD+sP +p+ a +++
    KIAA1665   138 QVWVWEYETEEGA--HDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATT 185  

                   eagdlyslreakesqaeeedeakekkpPYaLigScqedGLGlvSWW<-*
                   +                 ++e+  k++PY+L+gS++e+GLGl+SWW   
    KIAA1665   186 S-----------------SEELPKKEAPYTLVGSISEPGLGLLSWW    214  

PF08292.2.ls: domain 1 of 1, from 92 to 214: score 253.4, E = 4.3e-73
                   *->PFvGEVltGkIkgCSrEGihVslLgFFDDIfIPkemLfepsvFeeeE
                      PF++E+l GkIkgCS EG+hVs LgFFDDI+IP+e+L++p++F+e+E
    KIAA1665    92    PFLDEILIGKIKGCSPEGVHVS-LGFFDDILIPPESLQQPAKFDEAE 137  

                   qaWvWeydeEDGeepteLYlDvgEeIRFRVeeevFvDisPkspkeakele
                   q+WvWey++E+G+  ++LY+D+gEeIRFRV +e FvD+sP +p+ a +++
    KIAA1665   138 QVWVWEYETEEGA--HDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATT 185  

                   eagdlyslreakesqaeeedeakekkpPYaLigScqedGLGlvSWW<-*
                   +                 ++e+  k++PY+L+gS++e+GLGl+SWW   
    KIAA1665   186 S-----------------SEELPKKEAPYTLVGSISEPGLGLLSWW    214  

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