hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-09120836/chunk_1/iprscan-20080502-09120836.nocrc
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Query sequence: KIAA1663
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07742.3.ls BTG family                                     230.0    4.7e-66   1
PF07742.3.fs BTG family                                     228.1    1.7e-65   1
PF07145.5.fs Ataxin-2 C-terminal region                      46.1    1.1e-12   2
PF07145.5.ls Ataxin-2 C-terminal region                      50.1    6.8e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07742.3.fs   1/1       4   118 ..     1   121 []   228.1  1.7e-65
PF07742.3.ls   1/1       4   118 ..     1   121 []   230.0  4.7e-66
PF07145.5.fs   1/2     131   148 ..     1    18 []    23.5  6.5e-06
PF07145.5.fs   2/2     251   268 ..     1    18 []    22.6  1.2e-05

Alignments of top-scoring domains:
PF07742.3.fs: domain 1 of 1, from 4 to 118: score 228.1, E = 1.7e-65
                   *->MkeEIaaaVnFltrllrkkgkLprrrveiFaeeLeeiLfekYkgHWy
                      M+ EI++a+nF++++l++k  Lprrr   F+eeLe++L++kY+gHWy
    KIAA1663     4    MQLEIKVALNFIISYLYNK--LPRRRADLFGEELERLLKKKYEGHWY 48   

                   PEkPsKGsaYRCIRINCkahkmDpviekAaaeSGlsiddLlelLPkELTl
                   PEkP KGs++RC +I+   + +Dpv+e Aa++SGl  +d++ + P+EL++
    KIAA1663    49 PEKPLKGSGFRCVHIG---EMVDPVVELAAKRSGLAVEDVRANVPEELSV 95   

                   WVDPyEVSYRiGEkghpvcVlyfe<-*
                   W+DP+EVSY+iGEkg +v+Vly +   
    KIAA1663    96 WIDPFEVSYQIGEKG-AVKVLYLD    118  

PF07742.3.ls: domain 1 of 1, from 4 to 118: score 230.0, E = 4.7e-66
                   *->MkeEIaaaVnFltrllrkkgkLprrrveiFaeeLeeiLfekYkgHWy
                      M+ EI++a+nF++++l++k  Lprrr   F+eeLe++L++kY+gHWy
    KIAA1663     4    MQLEIKVALNFIISYLYNK--LPRRRADLFGEELERLLKKKYEGHWY 48   

                   PEkPsKGsaYRCIRINCkahkmDpviekAaaeSGlsiddLlelLPkELTl
                   PEkP KGs++RC +I+   + +Dpv+e Aa++SGl  +d++ + P+EL++
    KIAA1663    49 PEKPLKGSGFRCVHIG---EMVDPVVELAAKRSGLAVEDVRANVPEELSV 95   

                   WVDPyEVSYRiGEkghpvcVlyfe<-*
                   W+DP+EVSY+iGEkg +v+Vly +   
    KIAA1663    96 WIDPFEVSYQIGEKG-AVKVLYLD    118  

PF07145.5.fs: domain 1 of 2, from 131 to 148: score 23.5, E = 6.5e-06
                   *->kkkskLNPnAkEFVPssk<-*
                      ++ks++NP+A++FVP ++   
    KIAA1663   131    EIKSSFNPDAQVFVPIGS    148  

PF07145.5.fs: domain 2 of 2, from 251 to 268: score 22.6, E = 1.2e-05
                   *->kkkskLNPnAkEFVPssk<-*
                      ++ s+L+PnAkEFV+++    
    KIAA1663   251    APQSQLSPNAKEFVYNGG    268  

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