# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj03879s1.fasta.huge -Q ../query/KIAA1662.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1662, 1653 aa
 vs ./tmplib.25089 library

1985852 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 15.8214+/-0.0125; mu= -34.7224+/- 0.843
 mean_var=695.5012+/-169.697, 0's: 0 Z-trim: 9  B-trim: 24 in 1/39
 Lambda= 0.048632

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0864  ( 1402 res)   hk06577s1                  (1402)  816 73.6 3.2e-13


>>KIAA0864  ( 1402 res)   hk06577s1                       (1402 aa)
 initn: 873 init1: 281 opt: 816  Z-score: 329.1  bits: 73.6 E(): 3.2e-13
Smith-Waterman score: 816;  45.484% identity (76.452% similar) in 310 aa overlap (1350-1644:1037-1340)

    1320      1330      1340      1350      1360      1370         
KIAA16 ELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWR-------L
                                     .:.  .:....: :.::... :       :
KIAA08 CLQDTLCLHQGPHPKALPAPAPNWQATQGEADSMTGLRERIQELEAQMDVMREELGHKDL
       1010      1020      1030      1040      1050      1060      

           1380      1390       1400      1410      1420      1430 
KIAA16 QGEAPQSALRSQEDGHIPPGYISQEA-CERSLAEMESSHQQVMEELQRHHERELQRLQQE
       .:.:     . :.: .      : .: :::..: :: .::. .:.:::.:.:::..:..:
KIAA08 EGDAATLREKYQRDLE------SLKATCERGFAAMEETHQKKIEDLQRQHQRELEKLREE
       1070      1080            1090      1100      1110      1120

            1440      1450      1460           1470      1480      
KIAA16 KEWLLAEETAATASAIEAMKKAYQEELSRELSKTR-----SLQQGPDGLRKQHQSDVEAL
       :. ::::::::: :::::::.:..::. ::: :..     :...  ..::.:.  .....
KIAA08 KDRLLAEETAATISAIEAMKNAHREEMERELEKSQRSQISSVNSDVEALRRQYLEELQSV
             1130      1140      1150      1160      1170      1180

       1490      1500      1510      1520      1530      1540      
KIAA16 KRELQVLSEQYSQKCLEIGALMRQAEEREHTLRRCQQEGQELLRHNQELHGRLSEEIDQL
       .:::.:::::::::::: . : .  : ....::.::.:.:::  :::::..::. :: .:
KIAA08 QRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL
             1190      1200      1210      1220      1230      1240

       1550      1560        1570      1580      1590      1600    
KIAA16 RGFIASQGMGNGCGR--SNERSSCELEVLLRVKENELQYLKKEVQCLRDELQMMQKDKRF
       : .....: :.. :   .. ... ::::::::::.:.::::.:.. :.::::   .::..
KIAA08 RTLLTGDGGGEATGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKY
             1250      1260      1270      1280      1290      1300

         1610      1620      1630      1640      1650              
KIAA16 TSGKYQDVYVELSHIKTRSEREIEQLKEHLRLAMAALQEKESMRNSLAE           
       .: ::.:.:.:::  :.... .: .:::.:. :  :: ::                    
KIAA08 ASDKYKDIYTELSIAKAKADCDISRLKEQLKAATEALGEKSPDSATVSGYDIMKSKSNPD
             1310      1320      1330      1340      1350      1360

KIAA08 FLKKDRSCVTRQLRNIRSKSLKEGLTVQERLKLFESRDLKKD
             1370      1380      1390      1400  




1653 residues in 1 query   sequences
1985852 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:12:02 2008 done: Thu Dec 18 15:12:03 2008
 Total Scan time:  0.920 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]